Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04636 ATGGCCAATAACCCTTCAGAGGCTCCCGCCGCCGACGACTTCCTCGAACAAATCCTCGGCCTTCCCAACTTCGCTACCGGCGACTCTGGCTTGGGCGGACACGATGTCGGCTTGGCGGGAACGGGTTCTCCGGCTCCTCCGATGATGCTACAGCTCAACTCCGCCGATGCCAACCCCCACCTCGCCGCCGGTGCCTCCTTTCATGCGCCCGTCTACCAGTTAGGGTTGAGCTTGGACCAAGGCAAAGGAGTAGGTTTCTTGAAACCCGAAGAGCCATCAGGTAGTGGAAAACGCTTCCGCGACGACGTCGTTGATGGTAGACCTAAGAATGTTTTTCATGGACAACCCATGCCTACTACTATTCCTACTGCTCCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGGTTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCATTGCAGGAACTGGTTCCAAGTGTCAACAAGACAGACAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGTATGAGTAGATTGGGCGGAGCAGGTGCAGTAGCACCACTGGTAACTGACATCCCATTATCATCAGTGGAGCAGGAAGAAGGCAGTGAAGGTGCAAGAAACCGACCAGCTTGGGATAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAACTGATGGAAGAAAATGTTGGGGCTGCTATGCAATTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCATTGGCATCTGCAATATACCAGTCACAACCACCGGATAGCTCTAGTATAGTCAAGCCTGAAACTAATCCTCCTTCATAG 894 0.5123 MANNPSEAPAADDFLEQILGLPNFATGDSGLGGHDVGLAGTGSPAPPMMLQLNSADANPHLAAGASFHAPVYQLGLSLDQGKGVGFLKPEEPSGSGKRFRDDVVDGRPKNVFHGQPMPTTIPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEQEEGSEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPS. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04636 297 MobiDBLite consensus disorder prediction 107 144 - -
Seca1g04636 297 FunFam Basic helix-loop-helix transcription factor 135 197 - -
Seca1g04636 297 Pfam Helix-loop-helix DNA-binding domain 145 189 IPR011598 GO:0046983
Seca1g04636 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 93 276 - -
Seca1g04636 297 SMART finulus 146 195 IPR011598 GO:0046983
Seca1g04636 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Seca1g04636 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 199 IPR036638 GO:0046983
Seca1g04636 297 Gene3D - 135 197 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04636 Seca-Chr1 148322859 148327841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04636 67 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.000 3.68e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g04636 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04636 - - gmx:100797789 477.248