Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04634 ATGGCCAACAAAGTTCAATTTAAGACAAGCAATTCAGCACTTATTGCTATGATCGCAGATGAGGACACTGTGGTTGGATTTCTGCTGGCTGGAGTGGGTAATGTTGACTTGCGAAGGAAGACAAATTATCTTATTGTGGACTCAAAAACGACTGTTAAACAAATTGAAGATGCATTCAAAGAGTTCACAGCAAGGGAAGATATTGCAATAGTGTTGATTAGCCAATATGTTGCAAATATGATAAGGTTTTTAGTTGATAGCTACAACAAACCTGTTCCTGCAATATTGGAGATTCCCTCCAAAGACCATCCTTATGATCCAGCGCATGATTCTGTTCTTTCACGAGTGAAGCACCTCTTCTCTACTGAATCTGTGGCTTCTGGGAGACGCTAA 393 0.402 MANKVQFKTSNSALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTAREDIAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKHLFSTESVASGRR. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04634 130 SUPERFAMILY AtpF-like 15 99 IPR036906 GO:0034220
Seca1g04634 130 NCBIfam V-type ATPase subunit F 11 124 IPR005772 GO:0033180|GO:0046961|GO:1902600
Seca1g04634 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220|GO:0046961
Seca1g04634 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180|GO:0046961|GO:1902600
Seca1g04634 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220
Seca1g04634 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 126 - -
Seca1g04634 130 FunFam V-type proton ATPase subunit F 9 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04634 Seca-Chr1 148296693 148300164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04634 1 126 Primary Pumps ATPases(2) AT4G02620 84.921 8.49e-79 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04634 K02151 - aew:130791594 241.121