Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04633 ATGGAGACGCACGGCGGAGGAGGACCACTTCGTTCCCGTAGCTCCCAATCTCCTTCTCCTTCACACTCTGCCTCCGCTTCCGCCACCTCTTCCATCCACAAACGCAAGATGGCGTGTGACGACCACGCTCCTCCCTTCCCCCCTTCTTCCTTCTCCGCTGACACCCGCGACGGCGCCCTCACCTCCAATGACGACCTCGAGAGCATCTCCGCCCGCGGTGCCGACTCCGATTCCGACGACGACTCCGAGGACGCCGTCGTCGACGACGACGAGGACGACTACGACAACGACAACGATTCCTCCATGCGCACCTTCACCACCGCCAGGCTCAACAACCCTCCCTCCGCTCCTCGCAACACCAAGCTCAAGACTGATAATAACTCTACCGTCAAGATCGAGAATTCCGACGCCGCCAAAGACGCCGGACCCACCGCCACCGGTGCCGCTGCCACCGCGGGCTCCGTCCTGGGCATTGTGGTTAAGGAGGACGCAACTAAGATTTTTACTGATAATTTACAAACAAGCGGAGCTTACAGCGCCAGGGAAGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAAGCTCAGATTTGAATGCCTTTCCAATGATGGTGTTGATGAGCATATGGTTTGGTATATATTTCTCCTTTCTCTTCAACATTTCCTTAGGTTGATAGGACTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGCAATCATGTTGTTGGAGGCATTACATATCGTCCATATGTGAGCCAGAAGTTTGGTGAAATAGCCTTTTGTGCAATTACGGCTGATGAGCAAGTTAAAGGATATGGTACCAGATTGATGAATCACTTAAAACAGTATGCACGTGATATAGATGGGTTGACACATTTTCTCACATATGCTGACAACAATGCCGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGACAAGGAGCGATGGCAAGGTTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAAATTGATCCAAAGCTCCCTTACACTGATTTGTCAACCATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAGATCAGAGAGCTGTCAAACTGTCATATTGTTTATCCTGGAATTGATTTTCAGAAGAAAGAAGCTGGCATTCCTAAAAAAATTGTTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAACTTTGAGTGGGTCTACTGACAATGCTACAAATCAAAAACATTTGACTGTGTTTATGCGTTCACTTCTGAAGTCAATGCACGATCATGCTGATGCATGGCCCTTCAAGGAACCAGTTGATGCAAGGGACGTTCCTGATTATTATGACATCATCAAAGATCCTATGGATTTAAAGACAATGACTAAGCGGGTGGAGTCAGAACAATATTATGTCACATTTGAGATGTTCGTCGCGGATGTCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCAGAAACAATTTATTACAAATGTGCTACAAGGCTTGAAGCCCACTTTCAAAGCAAAGTGACAGCAGGCCTGCAGTCAGGTTCCAAAATTCAGTAG 1668 0.4694 METHGGGGPLRSRSSQSPSPSHSASASATSSIHKRKMACDDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDDSEDAVVDDDEDDYDNDNDSSMRTFTTARLNNPPSAPRNTKLKTDNNSTVKIENSDAAKDAGPTATGAAATAGSVLGIVVKEDATKIFTDNLQTSGAYSAREESLKKEEEAGKLRFECLSNDGVDEHMVWYIFLLSLQHFLRLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDIDGLTHFLTYADNNAVGYFIKQGFTKEIHLDKERWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKIVDDIPGLREAGWTPDQWGHSRFRTLSGSTDNATNQKHLTVFMRSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMTKRVESEQYYVTFEMFVADVRRMFANARTYNSPETIYYKCATRLEAHFQSKVTAGLQSGSKIQ. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04633 555 Gene3D - 215 367 - -
Seca1g04633 555 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 212 360 IPR000182 GO:0016747
Seca1g04633 555 PRINTS Bromodomain signature 476 492 IPR001487 GO:0005515
Seca1g04633 555 PRINTS Bromodomain signature 462 475 IPR001487 GO:0005515
Seca1g04633 555 PRINTS Bromodomain signature 511 530 IPR001487 GO:0005515
Seca1g04633 555 Pfam Acetyltransferase (GNAT) family 253 331 IPR000182 GO:0016747
Seca1g04633 555 Gene3D - 432 551 IPR036427 GO:0005515
Seca1g04633 555 MobiDBLite consensus disorder prediction 100 128 - -
Seca1g04633 555 CDD NAT_SF 253 307 - -
Seca1g04633 555 MobiDBLite consensus disorder prediction 1 128 - -
Seca1g04633 555 SMART bromo_6 440 549 IPR001487 GO:0005515
Seca1g04633 555 CDD Bromo_gcn5_like 447 546 - -
Seca1g04633 555 ProSiteProfiles Bromodomain profile. 459 530 IPR001487 GO:0005515
Seca1g04633 555 MobiDBLite consensus disorder prediction 9 32 - -
Seca1g04633 555 Pfam Bromodomain 452 534 IPR001487 GO:0005515
Seca1g04633 555 ProSitePatterns Bromodomain signature. 464 522 IPR018359 -
Seca1g04633 555 MobiDBLite consensus disorder prediction 77 97 - -
Seca1g04633 555 MobiDBLite consensus disorder prediction 54 69 - -
Seca1g04633 555 SUPERFAMILY Bromodomain 430 544 IPR036427 GO:0005515
Seca1g04633 555 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 228 365 IPR016181 -
Seca1g04633 555 PANTHER GH11602P 79 552 IPR037800 GO:0004402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04633 Seca-Chr1 148282212 148290820 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca1g04633 Bromodomain 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04633 K06062 - gmx:100813942 892.493