Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04618 ATGACAATGGGAGTAACAGGGGACCCGAACAAGCTCGAAAGGCAAATTCAGAAGCAGATGGGCTGCATGTCTGGTTTCCTTCACATCTTCGATCGCCACCAGATTTTCGCCGGAAAAACCAGAAGACTCCCTCCCTCTGCCTCTGCGCCTCCTCCGGAAATCTATTCCTCGCCGGAGCCGGACACATACACTGCCTCTCCGGCGGAATCAGCACCGGAAACAGAAACCGAAACAGAAACAACACCTCAACCATCAAAGCCTCCTCATCCTCCCCTTCCATCTTTCGAATTCAAGGAAGGCACGAGATCTCCATGGAAATTCTCCAGAGAAGCTCCCAGACTCTCCTTGGATAGCAGAGCCGTTGTGGATGCCAAAGGAACCTTCGAGAAGCAGCGGCGATCCACGAGCGTCGTTGCCAGGCTCATGGGCCTTGAGGATTCAGACCCGAACCCGAACCCGGAGCTCAGAAGATCCGCTTCCGAATCCAGAGCTCCCAGAGAAGATCTGCCTCAACATCAGTATCGTTTCTTCGACACAACGAATTTCCAGTTAAAGCAGTTTCATCACCAAGTTGATAAAAGAACCTCAGATCCAAACGCGAAAACAGAGTCCGCCAGGGGAGTAACAAGACAAAAGAAGAATTTCTACGATTCCGCTGACTTTTTCCCAGGGCCGAAGCTGCAGAATATTTCTGGCTACGGAGAGATTGAAAAGAGGTTGAAGATGCGAGGGATTGACGAACCTTCCAAGGATCTCGACACACTCAAGCAAATCCTCGAGGCCTTGCAGCTCAAAGGCCTCCTTCATTCCAAGAAATCCATGCCTCGAATTAACCACAGGAACTTCGTCTTCGATGACACGAACGACTCTCCCATTGTCGTAATGAAGCCCGCAAGATCTCCCGGTTCGTTGAATCGAACCAGATGGACCGGGAACGATTCTCCACCGTCATCCATTTTCCGGTCGAGTCCTCGTGCTCGACCGGAAGTTGAACCGCAAAGCAGGGGAAAAACCCCGAGCTCGCCCACTCGCAGCCCGAACCGGACAAGGAAGGTGACGCACACGGAACCGCAGAGAAAAATGAATGATGGCGTTGATCGGAGAAGGACTACTACTCCGGTTTATTCAAACAAGGTGAACCGGCAAATAACGTCGCCGAGGATGAGAAAAACCAACAATTACCAAAAGGAAGAAAAGGCTATGCCTATTACAGAGGATGAATCATCCACCGTTTCCGATAGCAGCTTCAGCACGTCTTCACACACTGATACAGAGAGGTTTAATAAGGTGGAGGATCAGTATAGGGAAGGGAGGGATCTACTGCAGAGGTGTGATAAGTTGCTGAATAGCATAGCGGAGATAACAGCAGGGACAGAGCTGCTACAACCGAGTCCAGTATCTGTGCTTGACTCGTCGTTTTACAAGGATGAGTCGTCGTGTTCACCGTCCCCGGTAATGAAACGCTGCATTGATTACAGAGATCAAGCAGCAGAGTCAGAAGATGATGCATGGAATTCAGCTTTGTGTTGCAGCGAAACCAAGTCCGAGGATTGCGATTTCGTATACGTTTCCGAGATACTGCGTGCTTCTAATTACTTCCCTGAAGACAGTGACGTTTTCATCTTTCTGGAGAAGCAGCAATATCTCAAGGGCCATGACACCTCCAAAGCCTCCACGCTACAAAGACGGTTGATCTTCGACACTATTCACGAGATCCTCAACCGCAACCGCCGTTTGCCGCCGTGGAGGGCGGTTTCCTGGACGGAGAACGCGCCGCTGTTGCTTCGGATCTGGTCGGATTTTCAGCGGATCCGAGAGAGGGAAGAGTCGTCGGAGGATCTGTTTGAAGTGATATGCGGGTTGTTGAGGAAGGACATGGAAGAGGGCGCCACCATGAATGAATGGGGAGAATGCCCCGTGGAAATGGGGGATATGGTGTTGGATATCGAACGGTTCATATTCAAAGATCTTATTGGCGAAACTATTCGAGATCTCGCCTCGTTTAAGGGACAGCGTAACAAAGTCTCAACGCTTCGCAGGAAGTTGGTGTTTTGA 2055 0.5051 MTMGVTGDPNKLERQIQKQMGCMSGFLHIFDRHQIFAGKTRRLPPSASAPPPEIYSSPEPDTYTASPAESAPETETETETTPQPSKPPHPPLPSFEFKEGTRSPWKFSREAPRLSLDSRAVVDAKGTFEKQRRSTSVVARLMGLEDSDPNPNPELRRSASESRAPREDLPQHQYRFFDTTNFQLKQFHHQVDKRTSDPNAKTESARGVTRQKKNFYDSADFFPGPKLQNISGYGEIEKRLKMRGIDEPSKDLDTLKQILEALQLKGLLHSKKSMPRINHRNFVFDDTNDSPIVVMKPARSPGSLNRTRWTGNDSPPSSIFRSSPRARPEVEPQSRGKTPSSPTRSPNRTRKVTHTEPQRKMNDGVDRRRTTTPVYSNKVNRQITSPRMRKTNNYQKEEKAMPITEDESSTVSDSSFSTSSHTDTERFNKVEDQYREGRDLLQRCDKLLNSIAEITAGTELLQPSPVSVLDSSFYKDESSCSPSPVMKRCIDYRDQAAESEDDAWNSALCCSETKSEDCDFVYVSEILRASNYFPEDSDVFIFLEKQQYLKGHDTSKASTLQRRLIFDTIHEILNRNRRLPPWRAVSWTENAPLLLRIWSDFQRIREREESSEDLFEVICGLLRKDMEEGATMNEWGECPVEMGDMVLDIERFIFKDLIGETIRDLASFKGQRNKVSTLRRKLVF. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04618 684 Pfam Domain of unknown function (DUF4378) 519 660 IPR025486 -
Seca1g04618 684 MobiDBLite consensus disorder prediction 188 209 - -
Seca1g04618 684 MobiDBLite consensus disorder prediction 369 390 - -
Seca1g04618 684 PANTHER LONGIFOLIA PROTEIN 78 684 IPR033334 GO:0051513
Seca1g04618 684 MobiDBLite consensus disorder prediction 40 100 - -
Seca1g04618 684 MobiDBLite consensus disorder prediction 141 170 - -
Seca1g04618 684 MobiDBLite consensus disorder prediction 334 348 - -
Seca1g04618 684 MobiDBLite consensus disorder prediction 59 82 - -
Seca1g04618 684 MobiDBLite consensus disorder prediction 405 423 - -
Seca1g04618 684 MobiDBLite consensus disorder prediction 292 427 - -
Seca1g04618 684 MobiDBLite consensus disorder prediction 303 321 - -
Seca1g04618 684 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04618 Seca-Chr1 148083662 148086649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04618 362 684 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 42.388 6.76e-71 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04618 - - lja:Lj1g3v4449210.1 794.653