Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04612 ATGAGTCTGGAAAAGAACCCTCGTGTGTTTTTTGATGTCTCAATTGATGGGGACCCCATAGAAAGAATTGTTATCGAGCTTTTTGCCAATATAGTTCCCAAGACAGCTGAGAATTTTCGGGCACTTTGTACAGGTGAGAAGGGCATTGGAGAATCAACTGGGAAACCTTTGCATTATAAAGGAACATGTTTTCATCGTATAATTAAAGGTTTTATGGCTCAAGGTGGTGATTTTTCAAAGGGTAATGGCACTGGTGGTGAAAGTATATATGGAGGAAAATTTGCAGATGAAAATTTCAAACTAAAACATGATGGACCTGGTGTTCTTTCTATGGCTAACAGTGGTCCTAACACAAATGGATCTCAGTTTTTTATTACATTCAAGCGCCAGCCTCATCTTGATGGGAAACATGTAGTTTTTGGAAAGGTTGCCCAGGGAATAGAGATTCTGAAGAAAATTGAGCAGGTGGGAACATCAGATGGGAAACCTACCCAGCCAGTTAAAATTATTGATTGTGGTGAAATCTCTAAAGCAAAAATTCAGCATACAGTTGAGAAAGAGAAAGGGAAAAAGAAAAAGTCAGGGAAATCCTTAACTTCTGATGATAGTTCTGACAAAAAATCAAGGGGAAAAAGAAAAAAATCTTCCAAAGACAGGAGGAAGAGGAGGAGATACTCAACATCTGATAGTGATAGTGATAGCGGTAGTGATAGCTATTCTTCAGATTCTGAGTCAGATTCCGCTTCAGATTCTGAATCGGATTCGTCATACTCTGATTCAAGTTCCTCTAGTTATCGGAAACACCAGAAGAGGAAGAGAAATAAACGCAAGCATGGGAAGAAGAGGAGTATTGGACGAAAGCAAAGGAGAAGCCAGCATAGTAAAAGTAGAAGATCAAGACACAAGTCCAGAAGGAGTTCTGAGGATTCAAGTGATACAGAAAGTGAGAGTTCTAGTGCTAGTGACAGTAGTTCTGGTGATGAGAAAGCTGGTCGTCGTGTCTCTGGTCTAAAAACAAATACTGATAATAAAGCTCAAAGAAGTCTTGGTATGTTTGCTACAGACACAGGAAAGCAATCTTCTAGTCTTCCCCTACAAAGTCAAACTATTCCAGAACAAGAGATGGATCCCAAGGTTAGAAGAACTATAGACAAGCAATCACATGAAGAAGGTGAATTGTCTCCAGAAAATGGTGCACTACTGAATAATGGGCATGATACTCAAGCCGAATTTAGTAAACCTGCTAAGCAACATACTTATTCAGATGATTCAAATCACAATAGGTTTTACTTCTTGGCTTTCTTAGCATCTAGGGGTGCAAGTCCTGGAAGAAGTCCTGCTAGAAGTCCTACCAGGAATTCTGGGGAGCTAAACCAAGGACGTTCTTTATTGGCTAGTCCTGGCCGAAAAACATCTGAACCTGCTGCCTCCAAACATGGTCAGGGCTTTTCAAAAAGCCCTTCACCAAATGGCATGCCTAAGCGTGTTAAAAAAGGACGCGGCTTTACTGAGCGATATGCCTTTGTACGAAGATATCGTACTCCATCTCCAGAGCGGTCTCCCCGTACATATCGTTATGGCGATAGGAATATAAGAAGGAACTTTGATAGAAATACAAGCTACAGAAGTTATTCTGAGCGCTCACCACCAAGACGTTTTCGAAGCCCACCAAGGGGCAGGAGCCGTCCAAGATACCAAAGCAGAAGAAGCATGAGTAGGAGCATCTCCCGCAGTCCAGTGCGTGGCCGTTTTAGAGACCGTGACCGTAGCCGGAGTCCGAAACGCAGTCTTAGTCCAGAAGACAGGCGGCCTCCCATAAGTGACAGATTAAAATCCCGACTTGGACCTCGAAGTGATCAACAATCTCCAGACAGAAGGAGGTCAAAGTCCAATTCTAGGAGCAATGGCTCTTCTCGCTCCAGATCCCCTGACGCTACACCACCAAGGCGTTGTGATAAAAGGACTTCAGTATCTCGTAGCAGGTCTAGATCCAGCTCTCCATCCGGACAAAAGGGTCTAGTCTCTTATGGAGATGCTAGTCCTGATTCTGGGGCAAGGTAG 2061 0.4304 MSLEKNPRVFFDVSIDGDPIERIVIELFANIVPKTAENFRALCTGEKGIGESTGKPLHYKGTCFHRIIKGFMAQGGDFSKGNGTGGESIYGGKFADENFKLKHDGPGVLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVAQGIEILKKIEQVGTSDGKPTQPVKIIDCGEISKAKIQHTVEKEKGKKKKSGKSLTSDDSSDKKSRGKRKKSSKDRRKRRRYSTSDSDSDSGSDSYSSDSESDSASDSESDSSYSDSSSSSYRKHQKRKRNKRKHGKKRSIGRKQRRSQHSKSRRSRHKSRRSSEDSSDTESESSSASDSSSGDEKAGRRVSGLKTNTDNKAQRSLGMFATDTGKQSSSLPLQSQTIPEQEMDPKVRRTIDKQSHEEGELSPENGALLNNGHDTQAEFSKPAKQHTYSDDSNHNRFYFLAFLASRGASPGRSPARSPTRNSGELNQGRSLLASPGRKTSEPAASKHGQGFSKSPSPNGMPKRVKKGRGFTERYAFVRRYRTPSPERSPRTYRYGDRNIRRNFDRNTSYRSYSERSPPRRFRSPPRGRSRPRYQSRRSMSRSISRSPVRGRFRDRDRSRSPKRSLSPEDRRPPISDRLKSRLGPRSDQQSPDRRRSKSNSRSNGSSRSRSPDATPPRRCDKRTSVSRSRSRSSSPSGQKGLVSYGDASPDSGAR. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04612 686 Gene3D - 1 182 IPR029000 -
Seca1g04612 686 MobiDBLite consensus disorder prediction 181 209 - -
Seca1g04612 686 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Seca1g04612 686 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 8 175 - -
Seca1g04612 686 CDD cyclophilin_ABH_like 7 173 - -
Seca1g04612 686 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 17 173 IPR002130 GO:0000413|GO:0003755
Seca1g04612 686 MobiDBLite consensus disorder prediction 266 302 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 181 423 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 374 392 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 444 466 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 439 686 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 231 263 - -
Seca1g04612 686 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Seca1g04612 686 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Seca1g04612 686 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Seca1g04612 686 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Seca1g04612 686 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Seca1g04612 686 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Seca1g04612 686 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Seca1g04612 686 MobiDBLite consensus disorder prediction 497 540 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 400 415 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 645 659 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 336 373 - -
Seca1g04612 686 MobiDBLite consensus disorder prediction 579 631 - -
Seca1g04612 686 SUPERFAMILY Cyclophilin-like 4 175 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04612 Seca-Chr1 148037850 148044020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04612 1 171 U-box Gene Family AT5G67530 45.763 2.29e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04612 K09566 - gmx:100791082 758.829