Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04608 ATGTCGAGCAGCCATAATCTGAAATGTGATGGCAGCTCATTTCTCATTGACATCACCAGCGCCCTTAGTAAAGTCACTGCCAATTACACCATTAGCAGTGCCAAAAGAAGGTGGCGTTTTGCTTTTATAGCAATCTGTTCCAGAAGGGTCATGCTTTCCCTGGCCAAAGAGGTCATATCCAAAAGAAAACCCCATCATCACTACTCTTCCACTTCTAGCACCACTCTTGATATAATTGAACCCTTAGTTACCCAACCTGTAAGCAATGAAACCAATCATTATACCTTGGTTCCTGATGTTGACAAAGCCAGACTTGCTAATATGGTTAAAGACAAAAACTTGGAAGTCCTTACTGAGTTTGGAGGAGTTGAACGTGTTGCAAATGTTCTTGGAACCATTCCAACAAAGGGAATCCTTGGCAGTGATGATGACATTACCAAACGACGTGAGTTGTTTGGTTCAAACACTTACCAGAGGCCACCACCCAAAATCTTCCTACACTTTGTGCTGGAAGCTTTCAATGACACCACTATTCTCATCCTTCTTGTTTGTGCTGGCCTTTCCCTTGGTTTTGGCATAAAAGAACATGGACCAGGGGAAGGCTGGTATGAAGGAGGGAGTATATTTGTAGCAGTTTTTCTGGTGGTGGTAGTCAGTGCACTCAGCAACTACAGACAAGAAAGACAATTTGACAAATTGTCCAAGATAAGTAACAACATCAAAGTTGAAGTTGTGAGAAATGGAAGGCCACAACAGATATCCATCTTTGAGGTTCTTGTGGGAGATATTGTATCTCTTAAGATTGGTGATCAAATTCCAGCTGATGGATTGTTCTTAGTTGGCCATTCCTTGCAAGTAGATGAATCTAGTATGACAGGTGAGAGCGACTATGTAGAAATTGAGCCATTAAAAAGCCCATTCTTGTTGTCTGGTGCAAAGGTAGTGGATGGCTATGCTCAAATGCTTGTTACATCCGTGGGAACCAACACAGCATGGGGTCAAATGATGAGCTCAATAACCGGAGACACCAAGGAAAGAACACCATTACAAGCTCGTCTTGACAAGTTAACCTCTTCTATTGGAAAGGTTGGCCTTGCAGTTGCATTTTTGGTTCTCCTAGTGTTGTTAATTCGTTATTTCACTGGAAACTCACAAGATAAGTATGGGAATACAGAGTTCAATGGAAGCAAAACTGATATAAATGATGTGTTCAATGCTGTTGTGCGTATTGTTGCAGCTGCAGTCACTATTGTGGTTGTGGCAATCCCTGAGGGTCTGCCATTGGCTGTCACTCTCACTCTGGCTTACTCCATGAAAAGAATGATGGCAGACCATGCAATGGTGAGGAAACTTTCAGCTTGTGAAACAATGGGGTCAGCAACAGTCATATGCACAGATAAAACTGGGACTTTGACATTGAATCAGATGAGAGTAACCAAGTTTTGGTTAGGCCTAGAAAATGTTATGGAAAATTTTTCCAATGCAATGGCCCCAAATGTTCTTGAATTATTCCACCAGGGAGTTGGACTCAATACAACTGGAAGTGTCTATAAGCCTTCATCAGTATCCGAACCTGAAATTTCAGGTAGTCCAACAGAGAAAGCTATTCTTTTGTGGGCAGTATCAGATTTAGGTATGGACATGGATGAACTGAAACAGAAACATACAGTTCTTCATGTTGAAACATTTAACTCAGAGAAGAAACGAAGTGGCGTGGCAATAAGGAAGGAGACAAACAACACAGTTCACGTGCATTGGAAAGGAGCTGCTGAGATGATACTTGCAATGTGTTCTAATTATATTGATAGTAATGGCACAAGGAAGTCCCTTGATGAAGAAAGGAGTAAACTTGAGAAGATAATTCAAGGCATGGCAGCTAGTAGCCTACGATGTATTGCTTTTGCTCACATGGAGATATCAGAAGACATTGATTATAGTGATAAGGAAAAAGCACATGAAATCCTAAGAGAAAATGGCTTGACCTTGCTTGGAATTGTTGGCCTCAAGGATCCATGCAGACCTGACGTTAAGAAAGCTGTGGAAACTTGCAAACTTGCAGGAGTTGATATTAAGATGATCACTGGAGATAACATATTTACTGCAAAGGCAATAGCAACGGAATGTGGAATATTAGATCTTAACGATTGTGCAAATGTAGGAGAAGTGGTGGAAGGTGTTGAATTCCGAAACTATACAGAGGAAGAGAGAATGGAGAAAGTTGACAAAATCCGTGTAATGGCAAGATCATCTCCTTTGGACAAACATTTGATGGTGCAATGTTTAAGAAAGAAAGGCCATGTAGTTGCAGTCACTGGAGATGGTACAAATGATGCACCTGCTCTAAAAGAAGCTGATATAGGACTTTCTATGGGGATCCAAGGCACTGAGGTTGCTAAGGAAAGCTCTGATATTGTTATCTTGGATGACAACTTCAATTCTGTTGCCACTGTTTTAAGGTGGGGACGGTGTGTTTATAACAACATCCAGAAATTTATCCAGTTTCAACTAACAGTGAATGTTGCAGCTCTTGTGATAAATTTTATTGCAGCAGTTTCTTCTGGGGATGTTCCCTTAACAACAGTTCAACTACTATGGGTGAATCTCATTATGGATACTCTAGGTGCTCTGGCACTGGCTACAGAACGACCTACAAAGGAGTTAATGCAGAAAAGACCAATAGGTAGAACAGAACCTCTTATTACTAGCATCATGTGGAGAAACCTTTTAGCTCAAGCTTTGTATCAGATTGCTGTTCTGTTGGTTTTACAGTTCTATGGAAAGTCAATCTTCAATTTTTCAACGAGTTCAACTCAAGAAGTATGGAGAAACTTAATGTATTCGAAGGCATTCACAAAAACCACCTGTTTCTTGGAATTGTGGGGATTACTATTGTTCTTCAAATCATGA 2907 0.4073 MSSSHNLKCDGSSFLIDITSALSKVTANYTISSAKRRWRFAFIAICSRRVMLSLAKEVISKRKPHHHYSSTSSTTLDIIEPLVTQPVSNETNHYTLVPDVDKARLANMVKDKNLEVLTEFGGVERVANVLGTIPTKGILGSDDDITKRRELFGSNTYQRPPPKIFLHFVLEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVSALSNYRQERQFDKLSKISNNIKVEVVRNGRPQQISIFEVLVGDIVSLKIGDQIPADGLFLVGHSLQVDESSMTGESDYVEIEPLKSPFLLSGAKVVDGYAQMLVTSVGTNTAWGQMMSSITGDTKERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSQDKYGNTEFNGSKTDINDVFNAVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLENVMENFSNAMAPNVLELFHQGVGLNTTGSVYKPSSVSEPEISGSPTEKAILLWAVSDLGMDMDELKQKHTVLHVETFNSEKKRSGVAIRKETNNTVHVHWKGAAEMILAMCSNYIDSNGTRKSLDEERSKLEKIIQGMAASSLRCIAFAHMEISEDIDYSDKEKAHEILRENGLTLLGIVGLKDPCRPDVKKAVETCKLAGVDIKMITGDNIFTAKAIATECGILDLNDCANVGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPLDKHLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMQKRPIGRTEPLITSIMWRNLLAQALYQIAVLLVLQFYGKSIFNFSTSSTQEVWRNLMYSKAFTKTTCFLELWGLLLFFKS. 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04608 968 Pfam Cation transporting ATPase, C-terminus 856 959 IPR006068 -
Seca1g04608 968 FunFam Calcium-transporting ATPase 474 671 - -
Seca1g04608 968 FunFam Calcium-transporting ATPase 217 340 - -
Seca1g04608 968 PANTHER CATION TRANSPORTING ATPASE 89 939 - -
Seca1g04608 968 SFLD C1.7: P-type atpase like 446 824 - -
Seca1g04608 968 Pfam Cation transporter/ATPase, N-terminus 121 188 IPR004014 -
Seca1g04608 968 PRINTS P-type cation-transporting ATPase superfamily signature 795 807 - -
Seca1g04608 968 PRINTS P-type cation-transporting ATPase superfamily signature 664 675 - -
Seca1g04608 968 PRINTS P-type cation-transporting ATPase superfamily signature 771 790 - -
Seca1g04608 968 PRINTS P-type cation-transporting ATPase superfamily signature 287 301 - -
Seca1g04608 968 PRINTS P-type cation-transporting ATPase superfamily signature 686 696 - -
Seca1g04608 968 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Seca1g04608 968 Pfam E1-E2 ATPase 240 442 - -
Seca1g04608 968 Gene3D - 141 340 - -
Seca1g04608 968 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 961 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca1g04608 968 SUPERFAMILY Calcium ATPase, transduction domain A 239 338 IPR008250 -
Seca1g04608 968 Pfam haloacid dehalogenase-like hydrolase 462 785 - -
Seca1g04608 968 NCBIfam HAD-IC family P-type ATPase 208 381 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04608 968 NCBIfam HAD-IC family P-type ATPase 742 851 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04608 968 NCBIfam HAD-IC family P-type ATPase 406 488 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04608 968 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 471 668 IPR023299 GO:0000166
Seca1g04608 968 ProSitePatterns E1-E2 ATPases phosphorylation site. 466 472 IPR018303 -
Seca1g04608 968 FunFam Calcium-transporting ATPase 788 960 - -
Seca1g04608 968 SUPERFAMILY Calcium ATPase, transmembrane domain M 120 940 IPR023298 -
Seca1g04608 968 CDD P-type_ATPase_Ca_PMCA-like 145 904 - -
Seca1g04608 968 SMART Cation_ATPase_N_a_2 119 193 IPR004014 -
Seca1g04608 968 SFLD p-type atpase 446 824 IPR044492 -
Seca1g04608 968 Gene3D - 474 671 IPR023299 GO:0000166
Seca1g04608 968 PRINTS H+-transporting ATPase (proton pump) signature 771 787 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04608 968 PRINTS H+-transporting ATPase (proton pump) signature 803 828 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04608 968 PRINTS H+-transporting ATPase (proton pump) signature 617 635 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04608 968 Gene3D - 461 816 IPR023214 -
Seca1g04608 968 Gene3D - 171 938 - -
Seca1g04608 968 FunFam Calcium-transporting ATPase 666 816 - -
Seca1g04608 968 SUPERFAMILY HAD-like 462 876 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04608 Seca-Chr1 147994123 147997105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04608 34 931 Primary Pumps ATPases AT3G63380 70.968 0.0 1223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04608 K01537 - gmx:100790034 1543.1