Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04606 ATGCCAGTGTCTCTTCTGTTACAAGAGTTCAAGACTTGGTTGGACTCAATCATCTGCTCTCTCCTCAGCAACAACCTCAAAAGATCAAGAAAAAAAGAAGCCTCCCTGGAAATCCAGGACCCAGATGCTGAGGTGATTGCTTTATCCCCAAAGGCCCTTCTAGCTACTAATAGATTTGTGTGTGAGATCTGCCATAAGGGTTTCCAGAGAGATCAGAATCTACAGCTTCATAGGAGGGGACATAACCTGCCATGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAGAAGAAAGTATATGTTTGCCCTGAACCTTCTTGTGTTCACCACAACCCTTCAAGGGCTTTAGGGGATCTTACAGGAATTAAGAAACACTATTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACTCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGAGTCTCAGCAAACCAATTAGCCATCACTGCAACAAACCCATTAGTTCACTCTCTCTTTCTCTTCCAAACCCAAACACAACCCAATTTTCATAACAACAACCACTTCACTACTCCCTCATGGGACTCATCATCATCACAACAAAACCCTAACCCTATCAAGCCAGAGCTTCAAACCTTCCACGTGTCCTCCTCCAACGCAGCCACGTCAGCAGCATACATGTCAGCCACTGCCCTCCTTCAAAAGGCTGCAACCGTCGGTGCCGCTGCCATCACGGGCCCACCCTCTGCTTCTGTTGGTGTCGGGTCAATGACTCACCTCAATATGACCGAGTTTGGAACGGTGAGTCATCATCAACTCGACTCGGTGGTACTGCCTGAGCCTGAGTACATGACCATGGCACGGAACCATAACCTCACTAGAGACTTTCTGGGGATAACGGGAGATGCCAACGGGGGAGTTAACGGCGCCTCAGTTGACGTTAGCATGAACGTGAAGGATATGCTAACCTTCACGGGGGGCGTAGACATTCATCACCACCACCACGCGCTGTTGAAGCCACAACAAGGTTTTGAATTCCTTGGGACAGCCACTGCCCCGGAAACGTGGGGGAATTGTTGA 1194 0.4749 MPVSLLLQEFKTWLDSIICSLLSNNLKRSRKKEASLEIQDPDAEVIALSPKALLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARVSANQLAITATNPLVHSLFLFQTQTQPNFHNNNHFTTPSWDSSSSQQNPNPIKPELQTFHVSSSNAATSAAYMSATALLQKAATVGAAAITGPPSASVGVGSMTHLNMTEFGTVSHHQLDSVVLPEPEYMTMARNHNLTRDFLGITGDANGGVNGASVDVSMNVKDMLTFTGGVDIHHHHHALLKPQQGFEFLGTATAPETWGNC. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04606 397 MobiDBLite consensus disorder prediction 223 246 - -
Seca1g04606 397 FunFam protein indeterminate-domain 12-like 38 106 - -
Seca1g04606 397 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Seca1g04606 397 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Seca1g04606 397 SMART c2h2final6 135 155 IPR013087 -
Seca1g04606 397 SMART c2h2final6 59 81 IPR013087 -
Seca1g04606 397 SMART c2h2final6 100 130 IPR013087 -
Seca1g04606 397 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Seca1g04606 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Seca1g04606 397 Gene3D Classic Zinc Finger 55 82 - -
Seca1g04606 397 Gene3D Classic Zinc Finger 93 183 - -
Seca1g04606 397 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 350 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04606 Seca-Chr1 147939158 147942659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04606 7 390 IDZ Gene Family AT4G02670 51.500 3.63e-120 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g04606 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04606 K25870 - gmx:100788975 512.301