Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04605 ATGAATTATCTATACCCTGTAAAAGAAGAGTACTTGGAACCAACATCATCATCATCAACATCTTACCTTGGAAGTGATGATGACCCATCAATGGTTCCTCCTCCAAGGCCAATGGAGGGGCTTCATGACGTAGGACCACCCCCATTTCTCACCAAGACTTTCGATGCAGTGGAGGACCCTACAACTAGCCACATAGTTTCATGGAACAGAGGTGGTGCTAGCTTTGTGGTTTGGGATCCACACACTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGGTTCCTAAGAGGGCATAGGCACTTGTTGGCAAACATAAGGAGAAGAAAGCATCAAAATTCCCAACCTACTTCTTCCCAACAAGCACAAGGTCACTGTGTTGAAGTTGGTCGTTTTGGACTAGATGAAGAGATTGATCGTTTGAGGCGTGACAAGCAAGTGTTAATGATGGAGCTTGTGAAGCTTAGACAGCAGCAGCAGAATACCAGATCCTACCTTCAAACAATGGAAGAAAGGTTAAGAGGGACAGAAATTAAACAGCAACAAATGATGGCTTTCTTAGCTAGAGCAATGAAAAATCCAACCTTTATTCAGCAGTTACTCCAACAAAAGGAGAAGAGAAAGGAGCTTGAAGAAGCAATGACTAAAAAGAGGAGAAGACCAATTGAGCAAGGACCTAGTGGTGTTGTTGGAGAATCAAGCAGTGGTGGTGAAAGAAGGAACAATGTTAAAGTTGAGCCAACAGCATTTGGGGAATTTGGATTTGAAGTGTCAGAGCTAGAAGTGTTAGCAATGGAAATGCAGGGTTTTGGTAGGGGTAGGAGACAACAAGAGGAAGTGGCTGAGGGACTAGAACCTCAAGAGAGGCTGGAAAAAGAACTTGATGAAGGGTTTTGGGAAGAACTCTTCAGTGAGAATTTTGAGGATGATGATTCAGAAGGTGTAGAATGGATACGATGTAGCTGA 1053 0.4264 MNYLYPVKEEYLEPTSSSSTSYLGSDDDPSMVPPPRPMEGLHDVGPPPFLTKTFDAVEDPTTSHIVSWNRGGASFVVWDPHTFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKHQNSQPTSSQQAQGHCVEVGRFGLDEEIDRLRRDKQVLMMELVKLRQQQQNTRSYLQTMEERLRGTEIKQQQMMAFLARAMKNPTFIQQLLQQKEKRKELEEAMTKKRRRPIEQGPSGVVGESSSGGERRNNVKVEPTAFGEFGFEVSELEVLAMEMQGFGRGRRQQEEVAEGLEPQERLEKELDEGFWEELFSENFEDDDSEGVEWIRCS. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04605 350 MobiDBLite consensus disorder prediction 12 45 - -
Seca1g04605 350 Pfam HSF-type DNA-binding 49 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g04605 350 SUPERFAMILY "Winged helix" DNA-binding domain 45 138 IPR036390 -
Seca1g04605 350 PRINTS Heat shock factor (HSF) domain signature 49 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g04605 350 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g04605 350 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g04605 350 Coils Coil 167 187 - -
Seca1g04605 350 SMART hsfneu3 45 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g04605 350 FunFam Heat shock transcription factor 1 42 139 - -
Seca1g04605 350 Gene3D - 42 139 IPR036388 -
Seca1g04605 350 MobiDBLite consensus disorder prediction 236 252 - -
Seca1g04605 350 MobiDBLite consensus disorder prediction 236 272 - -
Seca1g04605 350 ProSitePatterns HSF-type DNA-binding domain signature. 88 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g04605 350 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 259 IPR027725 -
Seca1g04605 350 MobiDBLite consensus disorder prediction 12 26 - -
Seca1g04605 350 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04605 Seca-Chr1 147880640 147883180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04605 27 347 HSF AT3G22830 54.775 6.05e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca1g04605 HSF_DNA-bind 6.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04605 K09419 - gmx:100794264 545.043