Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04600 ATGTTGGATGCAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAATTGTTGGAACCCCAAGTTATATGTGCCCGGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATATGGTCTCTGGGATGCTGTATTTATGAAATGGCTGCTCAAAAACCTGCTTTTAAAGCTTTTGACATTCAAGCATTGATTAACAAAATAAACAAGTCTATAGTAGCTCCGCTGCCAACTATGTATTCCAGTGCTTTTCGGGGGCTAGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAACTGCTGCAGAGTTACTGAATCATCCGCATCTTCAGCCTTACATTCTTAAAATTCACCTAAAATTAAATAACCCCAGAAGAAGTACTTTTCCATTCCAATGGCCTGAGTCAAACTACGTAAGGAGAACTCAGTTTGTAGAGCCAGAATCTGTTTCTGTTCTTTCTGAACATGATAAATGCTTGTCACTAAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAGCTGAACAAAGTTCTCAGTGCTCTACTCAAATGGCCCATGGATTGTCCACTTGTTCAAACGAGAAGATCTATGAATTATCTGTTGGTGGTGTCTGTGATCAATGCAATACTAAAAATTCAAAAGCCACAAAGTCCTCAACTGTTGAGAGAACACCAAGACTGAGAGCAGCTAAAGATTCCGCTGCTGCCAGAAGGCAGACAATGGCACCACCAAAGATATCCCGCACTGGTTCAAAGCATGATTCACTTCCAGTGTCTCATGCACCATCTAGAAAGTTTTCCCCACCAACTCGTAGAGCATCCCTTCCACTGCCTACAAGAACCAGGACAACAGCAAAGTTTTACACCAATGTTGGTCTCCTTCAAAGTGTGGACTCTCCTGATGTTTCTGTTAATGCACCACGAATTGACAAGATTGCAGAATTTCCAATGGCCTCTTGTGAGGATCCTATCTTCCCTGTCCGTGGACCATCATCAACATCAGCCCACTGCTCTTCTGACTCAGTAGCAAGTGCTGATTACAAGTGTACAATCCAGGTGGACAAAGTTATTGTCCCTACCAGTACCAGTGATGCTTGCCTTGGTGCAAAGGGCAGTGAATGCTCTAAGCATGTGACAATTGATGCTTCAAGCCATTCCTCTGCTGAGTTGCATCAGCGTCGATTTGACACCTCATCATACCAGCAACGTGCAGAGGCATTAGAGGGGTTGCTGGAGTTCAGTGCCCGGCTCCTACAACAACATAGGTTTGAAGAGCTTGGGGTGTTGCTGAAGCCATTTGGACCTGAGAAAGTTTCTCCAAGGGAAACTGCTATTTGGTTGGCCAAGAGCTTTAAAGAAGCTGTGATATAA 1395 0.4394 MLDAGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAQKPAFKAFDIQALINKINKSIVAPLPTMYSSAFRGLVKSMLRKNPELRPTAAELLNHPHLQPYILKIHLKLNNPRRSTFPFQWPESNYVRRTQFVEPESVSVLSEHDKCLSLSNDRALNPSISGAEQSSQCSTQMAHGLSTCSNEKIYELSVGGVCDQCNTKNSKATKSSTVERTPRLRAAKDSAAARRQTMAPPKISRTGSKHDSLPVSHAPSRKFSPPTRRASLPLPTRTRTTAKFYTNVGLLQSVDSPDVSVNAPRIDKIAEFPMASCEDPIFPVRGPSSTSAHCSSDSVASADYKCTIQVDKVIVPTSTSDACLGAKGSECSKHVTIDASSHSSAELHQRRFDTSSYQQRAEALEGLLEFSARLLQQHRFEELGVLLKPFGPEKVSPRETAIWLAKSFKEAVI. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04600 464 Gene3D Transferase(Phosphotransferase) domain 1 2 165 - -
Seca1g04600 464 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 420 - -
Seca1g04600 464 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04600 464 MobiDBLite consensus disorder prediction 218 284 - -
Seca1g04600 464 SUPERFAMILY Protein kinase-like (PK-like) 5 178 IPR011009 -
Seca1g04600 464 SMART serkin_6 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04600 464 Pfam Protein kinase domain 5 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04600 Seca-Chr1 147826608 147834549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04600 6 118 MAP Kinase Kinase Kinase AT1G53570 40.870 2.53e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca1g04600 Pkinase 7.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04600 K08857 - gmx:100810347 681.019