Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04582 ATGCCAACCACGCTGGGAATAGGAACTGCAAGAAGAAGAAGAAATAATCTGAGACGCCTCAACCAATGTTTCTCAAATTTCATTCAACCGTTCGCTCCTGATATTGATGATCACAACCGTCCATCTTCCATCACCGCCAAAGCAAATGCCATGTCATCAATCATGATAAAAAACTTCAACACTCTCTACGACCAAACCTTAACCCTACATTCCGAACCCGAATCCGAATCCGAACCCGCTGATTTCGCCACCGCCTTTGCCTCACAACGCTTCTTCTTCTCCTCCCCTGGCCGATCCAATTCCATCGTCGAATCCACCAACACTGACACGGACTTCACCCCGCCCTCATCCACCTCCTCATCCTCGTCGTTGCTGGCCGCCAACAACAAGAAGAAGAATAACAAGCCTTTTCTTAACGGCACTGTGGCGGTGCCGACTTACTCGCCGGATCCTTACATGGACTTCCGGCGGTCGATGCAGGAGATGGTGGAGGCGCGTCCGGAGTTGTTGATAGACGTGAAGTCAAATTGGGAAGCGTTGCACGAGCTTCTTCTATGCTATCTTGCGCTTAACCCGAAGAGCACTCACAGATTCATTCTTCGCGCTTTCTCTGATGTTCTCGTTAGCCTCATGTCCTTCTCTTCTTGTTCTTCTTCAAATCCTCCGCCGCCGCCGGAGAATCCCAATCCCGGCGGTGGCGGTGGATGTTAG 711 0.5091 MPTTLGIGTARRRRNNLRRLNQCFSNFIQPFAPDIDDHNRPSSITAKANAMSSIMIKNFNTLYDQTLTLHSEPESESEPADFATAFASQRFFFSSPGRSNSIVESTNTDTDFTPPSSTSSSSSLLAANNKKKNNKPFLNGTVAVPTYSPDPYMDFRRSMQEMVEARPELLIDVKSNWEALHELLLCYLALNPKSTHRFILRAFSDVLVSLMSFSSCSSSNPPPPPENPNPGGGGGC. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04582 236 NCBIfam uncharacterized plant-specific domain TIGR01568 142 211 IPR006458 -
Seca1g04582 236 MobiDBLite consensus disorder prediction 215 236 - -
Seca1g04582 236 ProSiteProfiles OVATE domain profile. 144 209 IPR006458 -
Seca1g04582 236 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 59 210 IPR038933 GO:0045892
Seca1g04582 236 MobiDBLite consensus disorder prediction 104 126 - -
Seca1g04582 236 Pfam Transcriptional repressor, ovate 148 210 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04582 Seca-Chr1 147557760 147558545 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca1g04582 Ovate 7.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04582 - - gmx:102660213 199.134