Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04576 ATGGAAAGCCGCACGAGCAGCAACAACCAGTGGAGAGCTGAGGAAGCCATTGGTGGCAATGCTGAAGCAATTCAAGCCCTCAGAGAACTCATAATATACCCTCTTCACTTTTCCCGCCAAGCACAGAAGCTTGGCCTTAAATGGCCAAGAGGGTTGCTGCTGTACGGTCCACCAGGCACTGGAAAGGCGAACTTTGTCTGCAATGCCAAGGGTTCAAATCATGGAGTTGCCACTCTAGGAAGGGCTTTACGCCTTTACTTAAACATCACCGACAATCCTAGGACAAGTTTGGTACGGGCAGTTGTTCGGGAATGCGGGGCACATTTGACAATCATCAGTCCGCACTCTGTTCATAGAGCACATGCTGGTGAAAGTGAGAGAATTCTCCGTGAGGCTTTTTCAGAGGCATCATCTCATGTAGCCTTGGGCAAGCCATCAGTTATCTTTATAGATGAAATAGACGCACTCTGTGCTCGTCGAGATTCTAAGTATGGGACAATTGATGACTTTTATGCTGATTGCTTTTATTTTATGAAGGGAGCAAGATGCCTGAGTTGCCTCCCAACTCTTTACACTGATGGACTCAAACAAGCCAACCTCTTCTACACCAGAGTGGATGCAATTGACCCTGCCCTAAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACAGTCCCAAATGAAGAGGAACGCTTTCAAATTCTAAAGCTGTATACAAAGAAGATTCCCTTGGATTCATCTGTTGACTTAAAATCCATTGCTGCATCATGCAATGGATATGTCGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGATTGCAGTTAAAAGGTCCTCAAATACAAACAAAGATGCTAGTGATTTCAGTTTAACAATGGAAGATTGGAAAAATGCAAGGTCTGTTGTTGGTCCAAGTATAACTAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGGGGATTGAAAGATTTGAAGAAAAAGCTCCAGCAAGCTGTTGAATGGCCTATGATGCATTCTTCTGCATTTTCAAGATTGGGAATACCCCCTTTCCGCGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCACATGCTGCAAAAGCCTCTTTCTTTTCCTTGAGGTTTGAATAA 1176 0.4473 MESRTSSNNQWRAEEAIGGNAEAIQALRELIIYPLHFSRQAQKLGLKWPRGLLLYGPPGTGKANFVCNAKGSNHGVATLGRALRLYLNITDNPRTSLVRAVVRECGAHLTIISPHSVHRAHAGESERILREAFSEASSHVALGKPSVIFIDEIDALCARRDSKYGTIDDFYADCFYFMKGARCLSCLPTLYTDGLKQANLFYTRVDAIDPALRRSGRFDAEIEVTVPNEEERFQILKLYTKKIPLDSSVDLKSIAASCNGYVGADLEALCREATMIAVKRSSNTNKDASDFSLTMEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKDLKKKLQQAVEWPMMHSSAFSRLGIPPFRGILLHGPPGCSKTTLAKAAAHAAKASFFSLRFE. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04576 391 Gene3D - 228 308 - -
Seca1g04576 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 62 IPR027417 -
Seca1g04576 391 Gene3D - 94 227 IPR027417 -
Seca1g04576 391 PANTHER AAA-FAMILY ATPASE 15 65 - -
Seca1g04576 391 Pfam ATPase family associated with various cellular activities (AAA) 360 388 IPR003959 GO:0005524|GO:0016887
Seca1g04576 391 Pfam ATPase family associated with various cellular activities (AAA) 94 224 IPR003959 GO:0005524|GO:0016887
Seca1g04576 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 307 IPR027417 -
Seca1g04576 391 Gene3D - 3 73 IPR027417 -
Seca1g04576 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 388 IPR027417 -
Seca1g04576 391 FunFam Cell division control protein 48 homolog B 227 309 - -
Seca1g04576 391 Gene3D - 309 391 IPR027417 -
Seca1g04576 391 Pfam AAA+ lid domain 248 291 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04576 Seca-Chr1 147493385 147500585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04576 291 389 Calmodulin-binding Proteins AT3G56690 48.485 7.72e-28 114