Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04575 ATGTATGTTGGAGAGGGAGAAGCTTTGCTTCGTAGAACATTTCAGAGAGCGCGTCTTGCAGCACCCAGTATAATATTTTTTGATGAGGCTGATGTGGTAGCTGGCAAACGAGGTGATAGTTCGAGCAATAGTGCTACGGTTGGAGAGAGGCTCTTATCCACTCTGCTGACTGAGATGGATGGGTTAGAAGAAGCTAAAGGAATCCTCGTGTTGGCAGCTACAAACCGCCCTTATGCAATTGATACTGCACTTACGCGTCCTGGACGATTTGATCGGATTTTATATGTACCACCACCTGATTTGGAGGCTAGATATGAGATACTTTGTATACATACAGCTAAGATGAATATAGGGAGTGATGTTGATCTCAGAAAACTAGCGGAAGATACTGAGCTCTTTACAGGTGCTGAACTAGAAGGATTATGCAACGAAGCTGGAATAGTAGCTCTAAGGGAAGACATATCTGCTAGTTATGTTTTTGACCGTCATTTCCAGATTGTGAAGAATTCTTTAAAACCAGCATTAACAACCGCAGATATTGATTCATACTCATCTTTTATGAAGACCTCATCTCGAGCTTTGCCTAGGCACTTTGAATCAGGTTTCAAACAGATGAGAACAAAACAGAATAGGTTGGGTCCTTTGTCTTTAGTTAAAGTTAGTGTAGTCAGCTGTATATTACTTGCTGCTGCTAACTACTATTTCATGCATGGAGACCAAACTGTAGGTGATATAGCCACCTGA 744 0.4167 MYVGEGEALLRRTFQRARLAAPSIIFFDEADVVAGKRGDSSSNSATVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDTALTRPGRFDRILYVPPPDLEARYEILCIHTAKMNIGSDVDLRKLAEDTELFTGAELEGLCNEAGIVALREDISASYVFDRHFQIVKNSLKPALTTADIDSYSSFMKTSSRALPRHFESGFKQMRTKQNRLGPLSLVKVSVVSCILLAAANYYFMHGDQTVGDIAT. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04575 247 Pfam ATPase family associated with various cellular activities (AAA) 2 97 IPR003959 GO:0005524|GO:0016887
Seca1g04575 247 FunFam spermatogenesis-associated protein 5-like protein 1 99 185 - -
Seca1g04575 247 Gene3D - 1 98 IPR027417 -
Seca1g04575 247 PANTHER AAA-FAMILY ATPASE 1 190 - -
Seca1g04575 247 Gene3D - 99 172 - -
Seca1g04575 247 ProSitePatterns AAA-protein family signature. 68 86 IPR003960 GO:0005524|GO:0016887
Seca1g04575 247 Pfam AAA+ lid domain 120 164 IPR041569 -
Seca1g04575 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 155 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04575 Seca-Chr1 147491143 147492760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04575 2 173 Calmodulin-binding Proteins AT3G56690 45.930 2.68e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04575 - - gmx:100814288 399.823