Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04554 ATGCTTAAGAAAGTAGCTGATGCAATAACCAACCTTGCCCATGAGAACACCAGCGTTAAGACCCTCGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGATATCAAGGTACGGAGGGCAGCTGCAGCAGCCTTGCGGACTCTTGCATTTAAAAATGATGAAAATAAGAATCAGATTGTTGGATGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCAGGCGATCCTACAATACATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCCTCGCCAAATATTAAGAAAGACGTTATTGAAGCTGGGGTTTTACAACCAGTCATTGGCTTACTGAGTTCCCCTTGTTTGGAGAGCCAAAGAGAAGCTGCTCTTTTAATCGGTCAATTTGCTGCAACAGATTCAGAATGCAAGGTTCACATTGCACAAAGAGGGGCTATAAAACCATTAATTGACATGCTTAAGTCTCCAGATGCAAATCTTAGGGAAATGTCAACTTTTGCGCTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCATAACGGAGGTATAGAGCCTCTGCTGAGTCTTCTTGACTCAAAGAATAGGGCCGTCCAACACAATGCAGCTTTTGCTCTATATGGTCTTGCTGATAATGAGGACAATGTTGCAGATATTATAAAGGCGGGTGGTTTTCAAAAAATGCTAGATGGACACTTCAAAGTTCCACCTACTAAAGAGTGTGTATCAAAGACGTTAAAGAGATTAGAGGAGAAGATGGATGTACAAGTCCTGAGACACCTGTTATATCTTATGAGCTTTGCAGAGAAAGGTGTTCAGAGACGTGTAGCTCTTGCTCTTGCTCATTTATGTTCCCCTGACTATAGTAAAAGTATTTTTATTGACAATAATGGATTAGAAGTGCTGTTGGATCTTCTTGAATCTACAGACCTAAAGCAGAAGGGTGAAGCTTCAGCAGCGCTTTACAAGTTGGCTACCAAAGCCACATGTGTCTCTCTTGTTGATGCTGCTCCTCCATCACCATCTCCACAGGTGTACTTGGGCGAGCAATATGTAAACAATCCTAAACTTTCTGATGTCACATTCTTAGTTGAAGGGAAAAGGTTTTATGCTCATAGAGCTTGTTTACTTGCTTCTGACATATTTCGTGCAATGTTTGATGGGGGTTACAGGGTAATCATAAATTAA 1224 0.4175 MLKKVADAITNLAHENTSVKTLVRMEGGIPPLVELLEFNDIKVRRAAAAALRTLAFKNDENKNQIVGCNALPTLVLMLRSGDPTIHYEAVGVIGNLVHSSPNIKKDVIEAGVLQPVIGLLSSPCLESQREAALLIGQFAATDSECKVHIAQRGAIKPLIDMLKSPDANLREMSTFALGRLAQDSHNQAGIAHNGGIEPLLSLLDSKNRAVQHNAAFALYGLADNEDNVADIIKAGGFQKMLDGHFKVPPTKECVSKTLKRLEEKMDVQVLRHLLYLMSFAEKGVQRRVALALAHLCSPDYSKSIFIDNNGLEVLLDLLESTDLKQKGEASAALYKLATKATCVSLVDAAPPSPSPQVYLGEQYVNNPKLSDVTFLVEGKRFYAHRACLLASDIFRAMFDGGYRVIIN. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04554 407 SUPERFAMILY POZ domain 361 404 IPR011333 -
Seca1g04554 407 Gene3D - 1 97 IPR011989 -
Seca1g04554 407 SMART arm_5 142 182 IPR000225 GO:0005515
Seca1g04554 407 SMART arm_5 183 223 IPR000225 GO:0005515
Seca1g04554 407 SMART arm_5 100 140 IPR000225 GO:0005515
Seca1g04554 407 SMART arm_5 297 338 IPR000225 GO:0005515
Seca1g04554 407 SMART arm_5 16 56 IPR000225 GO:0005515
Seca1g04554 407 SMART arm_5 58 98 IPR000225 GO:0005515
Seca1g04554 407 Pfam BTB/POZ domain 362 401 IPR000210 GO:0005515
Seca1g04554 407 Gene3D Potassium Channel Kv1.1; Chain A 356 404 IPR011333 -
Seca1g04554 407 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 27 62 IPR000225 GO:0005515
Seca1g04554 407 Pfam Armadillo/beta-catenin-like repeat 58 97 IPR000225 GO:0005515
Seca1g04554 407 Pfam Armadillo/beta-catenin-like repeat 142 181 IPR000225 GO:0005515
Seca1g04554 407 Pfam Armadillo/beta-catenin-like repeat 20 55 IPR000225 GO:0005515
Seca1g04554 407 Pfam Armadillo/beta-catenin-like repeat 190 221 IPR000225 GO:0005515
Seca1g04554 407 Pfam Armadillo/beta-catenin-like repeat 102 134 IPR000225 GO:0005515
Seca1g04554 407 ProSiteProfiles BTB domain profile. 370 407 IPR000210 GO:0005515
Seca1g04554 407 SUPERFAMILY ARM repeat 4 339 IPR016024 -
Seca1g04554 407 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 195 IPR000225 GO:0005515
Seca1g04554 407 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 403 IPR044282 -
Seca1g04554 407 Gene3D - 245 350 IPR011989 -
Seca1g04554 407 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 69 111 IPR000225 GO:0005515
Seca1g04554 407 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 236 IPR000225 GO:0005515
Seca1g04554 407 Gene3D - 98 244 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04554 Seca-Chr1 147105242 147113700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04554 93 340 U-box Gene Family AT2G23140 26.255 6.36e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca1g04554 BTB 7.4e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04554 - - cit:102617812 612.068