Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04545 ATGGCGACGCCGCCAAACAGCAAGCTTCAGAGTATGTTGCAGGCTGCGGTGCAATCGATTCAGTGGACTTACACCATCTTCTGGCAATTCTGTCCACAACAAGGGATTCTGAAGTGGGGTGATGGATACTACAACGGAGCAATTAAGACCCGAAAGACGGTTCAAGCAGTTGAGCTTAGCATTGAAGAGGCTTCTCTCCAAAGAAGCCAGCAACTGAAAGAGTTGTATGATTTGTTGTCTGCGGCAGAGACAAACCCTCCTCCGCCAAGTGCTGCTTCGTTGTCGCCGGAGGATCTAACGGACTCTGAATGGTACTATTTGTTGTGTGTCACTTTCTCCTTTCATCCTGGTCAAGGGTTGGCCGGAGCGGCATATGCCAGGAGGCAGCATTTATGGCTGACTGGTGCAAGCGAAGTGGATGGCAAGACATTTTCAAGAGCTCTTCTTGCCAAGACAGTGGTGTGCATTCCTCTATTGGAGGGCGTCGTTGAGTTCGGCACAACCGATAAGGTCGAAGAAGACCTTGATTTGATCGAAACCCTAAAGAGATTCTTCATAGATGATTATCATCCTCCAACGCCAAAGCTTGCTGTTCTTTCAGAACACTCAACCTCCACGAATTCTACTTCTTCACACTCTGCCATGGCCGCACCCAACGATGATGATAATAATAATAATAATAAAGAAGAAGCCAAATTAGGATCTGAATCAGAAACATTAATCCGTAATACTAACAGTACTAGTTTCCCAACAAATGAGATAATGGAACTGGAGGACTTCTGCTGGGTCGGATCACATGATGATGGATCGACCCATATTTGGGGGCCGGTAGAGGACTCATTGGTGTTAGGTTCAACCGGGTTGGAAATCTTTCAACCCGCTTCAGTACTTGTTTCCTCGGAAGACTTGGCACAAGGCGACAGTACCTTCTACTCTCAAACGCCCTCCGTCGAACACCTCACCGATGCTTTCCAATCAGCTTTCTCCGACTGGATCACCGGCGCCGACAACCACCACAATGATGCGGAGGCTGACATCCTCACCTCCCAATGGCTCCTCAAGTACATTCTATTCAGCGTCCCTTACTTGCACGCCAAACACAAGTCCCTACGTGGGAAGGCCACACTGCAACACTACGAGGCGAGTGGCAGCCACGTGCTAGCGGAGCGTCGCCGCCGTGAGAAGCTGAACGAGAGGTTCATCATTCTGAGGTCGTTGGTGCCGTTCGTGACCAAAACGGACAAAGCCTCCATATTAGGTGACACCATCGAGTACGTGAAGCAACTGAGCGATACGGTGCAGAGCCTCGAGGCGCGTAAGCGCCAGATGGAGGCTGATCAACGGCGGAGAATAAACAAGAAGAGGAGGGTTAAGGAAGTTGAGGTGGAGGTTTCAATCATAGGGAATGATGCATTGTTGGAGGTGGAGTGCATGCATAGGGAAGGGTTGTTGGTGGATGTGATGAAAGTGCTGAGGGAGTTAGGGGTGGATGTGATGTTGGTGCAGTCTTCGGTGAATGATGATGGAGTGTTTGTGGCAGAGTTGAGGGCTAAGGTGAAGGAAAATGCAAAGGGGAAGAAGGTTAGTATTGTGGAAGTAAAGAAGGCTCTATACCAGGTTATACCCTATCATCATTGA 1638 0.4921 MATPPNSKLQSMLQAAVQSIQWTYTIFWQFCPQQGILKWGDGYYNGAIKTRKTVQAVELSIEEASLQRSQQLKELYDLLSAAETNPPPPSAASLSPEDLTDSEWYYLLCVTFSFHPGQGLAGAAYARRQHLWLTGASEVDGKTFSRALLAKTVVCIPLLEGVVEFGTTDKVEEDLDLIETLKRFFIDDYHPPTPKLAVLSEHSTSTNSTSSHSAMAAPNDDDNNNNNKEEAKLGSESETLIRNTNSTSFPTNEIMELEDFCWVGSHDDGSTHIWGPVEDSLVLGSTGLEIFQPASVLVSSEDLAQGDSTFYSQTPSVEHLTDAFQSAFSDWITGADNHHNDAEADILTSQWLLKYILFSVPYLHAKHKSLRGKATLQHYEASGSHVLAERRRREKLNERFIILRSLVPFVTKTDKASILGDTIEYVKQLSDTVQSLEARKRQMEADQRRRINKKRRVKEVEVEVSIIGNDALLEVECMHREGLLVDVMKVLRELGVDVMLVQSSVNDDGVFVAELRAKVKENAKGKKVSIVEVKKALYQVIPYHH. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04545 545 MobiDBLite consensus disorder prediction 200 236 - -
Seca1g04545 545 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 185 IPR025610 -
Seca1g04545 545 PANTHER TRANSCRIPTION FACTOR TT8 3 541 - -
Seca1g04545 545 SMART finulus 386 435 IPR011598 GO:0046983
Seca1g04545 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 447 IPR036638 GO:0046983
Seca1g04545 545 Pfam Helix-loop-helix DNA-binding domain 384 429 IPR011598 GO:0046983
Seca1g04545 545 Gene3D - 377 447 IPR036638 GO:0046983
Seca1g04545 545 MobiDBLite consensus disorder prediction 200 222 - -
Seca1g04545 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 429 IPR011598 GO:0046983
Seca1g04545 545 Coils Coil 426 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04545 Seca-Chr1 146935029 146941703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04545 1 541 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 46.154 1.78e-146 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g04545 bHLH-MYC_N 7.7e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04545 - - aprc:113862120 602.823