Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04544 ATGGCTACGCCGCCAAATAACAACCTTCAAACCATGTTGCAAGCTGCGGTGCAATCGGTCCAGTGGACTTACACCATCTTCTGGCAATTTTGTCCACAACAAGGGATTCTGAAATGGGGTGACGGATACTATAACGGAGCAATTAAGACTCGAAAGACGGTTCAAGCAGTTGAGCTTAGCATGGAAGAGGCGTCACTACAAAGAAGCCAGCAACTGAAAGAGTTGTTTGAATCTCTGTCTGTTGCAGAGACAAACCCTCAAAATCGGAGGCCAAGTGCTGCGTTGTCGCCGGAGGACCTAACGGAATCTGAATGGTTCTATTTGTTGTGTATCTCATTCTCCTTTCATCCTGGTGACGGGTTGGCTGGAGCAGCATATGCCAGGAGGCAGCATTTATGGCTCACCAGTGCAAACCAAGTGGACACCCAAACATTTTCTAGAGCTATTCTTGCCAAGAGTGCAAATGTACAGACAGTGGTGTGCATTCCTCTATTAGAGGGCGTCGTTGAGTTCGGCACAACCGATAAGGTTGAAGATGACCTTAATTTCATCCAACATGTAAAGAGCTTCTTCATAGATTACCGTATTCCCATGCCAGAGCCTGCCCTATCAGAACAATCGGCCTCTAATCCCACATGTTCATTCCCTACCTTTGCCACAGCCAATATTTCAAATCAAGATGACATGAACCATGATAAACAAGAAGCCAAATTAGATTCCCAACCAGAAACAGTCCGTAACAGTTTTCCACCAAGCAAAGAACAATTGGATCTGGACACGTTGGATGACTTCCGGGTCGGGTCGCCTAGGGATGGTCCAAACCAGTTGGATTGGTATCCGGAACCGGAAGAGTCGACCCATGTGTGGGCCCCAGTGGAGGAGATGGCAGCGGCACAACAAATACAACAACCAGCTTCAGTACTTGTTCTCTCGGAAGAAATGGCACAAGGCGACACCCACTACTCTCAAACGGTGTCCACCATCCTTCAAAATCAAAACAACTCCGCCAGCTGGTGGCTAGACTCACCCTCCGTTGGCCACGTCACCGATTCCTTCCAATCAGCTTTCACCACGTGGATAACCGTTGCCGATGACCACCTTCATCACGCGGCAATGGACACCATCACCTCCCAGTGTGTCCTCAAGTACATTCTGTTCAGCATCTCTCACTTGCACGCCAACCACAAGGGAACGCTACAAAAATACTCGGCGAGTGGCAGCCACGTGCTTGCCGAGCGTCGGCGCCGCGAGAAGCTAAGCGAGAGGTTCATCATCCTGAGGTCGTTAGTGCCGTTTATGACTAAAACGGATAAAGCGTCCATATTAGGAGACGCCATCGAGTACGTGAAACAACTGCGTGACAGGGTGCAGATCCTCGAGGCGCGTAAACGTCAGATGGAGGCAGATCAACGGTGGAGATCAAATAAGAAGAGGAAGGTGAGGGAGGTTGAGGTAGAACTAGAAGTTTCAATCATTGAGAGTGATGTGTTGTTGGAGGTTGAGTGCATGCATAGGGAAGGGTTATTGGTGGATGTGATGAAAGCGTTGAGGGAGTTAGGGGTGGAAGTGATGTTGGTGCAGTCATCGGTGAAAGATGATGGAGTGTTTGTGGCAGAGTTGAGGGCTAAGGTGAAGGAAAATGAGAAGGGAAAAAAGGTTAGTATTGTGGAAGTGAAAAAGACACTTAACAAGATAATACCTGATCATCATCATCCATATTCGTTAGATGCTAATGGTTCGAGGATGTGTGTGAACTTGGAGTGCATGCAGCATTTTCACGGGATGAGTAGGGAAGACAATAATGCTCATAATTTCGTGTCTGTTGGCATTGTTTGA 1836 0.4798 MATPPNNNLQTMLQAAVQSVQWTYTIFWQFCPQQGILKWGDGYYNGAIKTRKTVQAVELSMEEASLQRSQQLKELFESLSVAETNPQNRRPSAALSPEDLTESEWFYLLCISFSFHPGDGLAGAAYARRQHLWLTSANQVDTQTFSRAILAKSANVQTVVCIPLLEGVVEFGTTDKVEDDLNFIQHVKSFFIDYRIPMPEPALSEQSASNPTCSFPTFATANISNQDDMNHDKQEAKLDSQPETVRNSFPPSKEQLDLDTLDDFRVGSPRDGPNQLDWYPEPEESTHVWAPVEEMAAAQQIQQPASVLVLSEEMAQGDTHYSQTVSTILQNQNNSASWWLDSPSVGHVTDSFQSAFTTWITVADDHLHHAAMDTITSQCVLKYILFSISHLHANHKGTLQKYSASGSHVLAERRRREKLSERFIILRSLVPFMTKTDKASILGDAIEYVKQLRDRVQILEARKRQMEADQRWRSNKKRKVREVEVELEVSIIESDVLLEVECMHREGLLVDVMKALRELGVEVMLVQSSVKDDGVFVAELRAKVKENEKGKKVSIVEVKKTLNKIIPDHHHPYSLDANGSRMCVNLECMQHFHGMSREDNNAHNFVSVGIV. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04544 611 Coils Coil 449 469 - -
Seca1g04544 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 403 452 IPR011598 GO:0046983
Seca1g04544 611 Pfam Helix-loop-helix DNA-binding domain 407 453 IPR011598 GO:0046983
Seca1g04544 611 SMART finulus 409 458 IPR011598 GO:0046983
Seca1g04544 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 407 470 IPR036638 GO:0046983
Seca1g04544 611 Gene3D - 403 479 IPR036638 GO:0046983
Seca1g04544 611 PANTHER TRANSCRIPTION FACTOR TT8 3 567 - -
Seca1g04544 611 MobiDBLite consensus disorder prediction 230 257 - -
Seca1g04544 611 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04544 Seca-Chr1 146903334 146913922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04544 1 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 61.836 1.38e-89 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g04544 bHLH-MYC_N 1.7e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04544 - - aprc:113862120 682.945