Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04534 ATGGATAGTGAAGATACACGCAGGGGTTTGAAAAGAAAGCCCTCACAGATGGATCGAGGGCATGAACATGGATCTTACAATATGAATTCTAGACCTTATGATAGGAACATGCCTCCTCCTGGTTGGTTAGACTGCCCACCACATGGGCAAGAACTGGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATTACATTCCAAGTCAAAAATATACTCCCAAGCAAGCAATTCTTCAACAAAGAGCCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACGCGTTACTATCCAGTATCAGATTGGACAAGAGAAGGGATTAGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCCGTACCTGATGATGAATCTGTAAAACAATTTTGCGATGAGGTTCTGGATTTTCGCTCCCGAAGAACAAACACAGAGAAATATATACTGGTACACTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCATTTTCTTGTGCGTACGGAATCAATTTCTGTCACCGCGGCAATACATAGATTTGCTTGGGCACGTCACCCTGGAATTTACAAGCAGGATTACATTGACGCGCTATACACATTTTATGATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCAGACTGGAAGAGACTTTCTGATCCTGATTTTCATGATGTGGCTGTCCCAGCTGCAGACAATTGTGGAGATATTCCACAGAAGGAAAATATTGTGAGGAATGAAGTGTTGACAAATGATGATGTTTTGGGAGATTCAATTCCTCCAAACGAGCTGCGTACAATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGCTTGCAGTTTCCTGGATCGCATCCTGTTTCTCTGAACAGGGAAAATCTGCAACTCCTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGATATATGATGTTAATTACTTGGGATGGATGTTATCTGATTGACAGAAAGTTTCTTTTTCGAAGGATCAATATGCGGTTTCCTTGCAGATACTCAAATGGGGGTATACCTGAGAAGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCACATACAGGGAAGCAAGAGAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTTTGACAGAGCTTCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATCGAACCTCGTAACATGGAACGTGAGGGTCTTTTGAAGAGTATAAATCCTTATTACAGATACGACTTGGAACCATTTAGTGTACGTATATATAATGATATTTACTAG 1371 0.407 MDSEDTRRGLKRKPSQMDRGHEHGSYNMNSRPYDRNMPPPGWLDCPPHGQELGCIIPSKVPLGESFNDYIPSQKYTPKQAILQQRALGRELGLVIDLTNTTRYYPVSDWTREGISHVKIRCKGRDSVPDDESVKQFCDEVLDFRSRRTNTEKYILVHCTHGHNRTGYMIVHFLVRTESISVTAAIHRFAWARHPGIYKQDYIDALYTFYDEKKPEDLVCPQTPDWKRLSDPDFHDVAVPAADNCGDIPQKENIVRNEVLTNDDVLGDSIPPNELRTMQEVCYQLLKLGTGGRGRLQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITWDGCYLIDRKFLFRRINMRFPCRYSNGGIPEKNHHYTLLDGEMIIDTDPHTGKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLLKSINPYYRYDLEPFSVRIYNDIY. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04534 456 Gene3D Protein tyrosine phosphatase superfamily 12 232 IPR029021 -
Seca1g04534 456 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g04534 456 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 39 226 IPR029021 -
Seca1g04534 456 SMART dsp_5 71 211 IPR020422 GO:0006470|GO:0008138
Seca1g04534 456 MobiDBLite consensus disorder prediction 1 32 - -
Seca1g04534 456 Gene3D DNA ligase/mRNA capping enzyme 252 454 - -
Seca1g04534 456 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 134 203 IPR000387 GO:0016311|GO:0016791
Seca1g04534 456 ProSitePatterns Tyrosine specific protein phosphatases active site. 156 166 IPR016130 GO:0016311|GO:0016791
Seca1g04534 456 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 276 447 - -
Seca1g04534 456 PIRSF mRNA_capping_HCE 25 455 IPR017074 GO:0004484|GO:0006370|GO:0140818
Seca1g04534 456 FunFam mRNA capping enzyme family protein 34 246 - -
Seca1g04534 456 CDD Adenylation_mRNA_capping 272 450 IPR001339 GO:0004484|GO:0005524|GO:0006370
Seca1g04534 456 Pfam Dual specificity phosphatase, catalytic domain 90 209 IPR000340 GO:0008138|GO:0016311
Seca1g04534 456 PANTHER MRNA-CAPPING ENZYME 33 450 - -
Seca1g04534 456 CDD RNA_5'-triphosphatase 41 206 - -
Seca1g04534 456 Pfam mRNA capping enzyme, catalytic domain 301 451 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04534 Seca-Chr1 146781527 146789262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04534 27 450 Protein tyrosine phosphatase (PTP) family AT3G09100 59.722 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04534 K13917 - lang:109348476 813.142