Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04516 ATGGTGGTGTGTATTTATTTATTTTTTGGGTCGGGGGTGGTGTGGTGTGTGTTGTTTCTTTCTTTTTCCTCCGAGAAAAAGTGGGGGCTGCAAGAATTGGGCCGCACGAATATTACGGGTCGGTGTCGGGCGCCCATTCTAAAACCCTCACTTCTTGTTTTCTCACTCTGCGCTGTGTGCAGTGCTCTGCTAAAACCCTCATTCGCCTCTGCAACCTTCTTCTTCTTCCACTCTAGGGCTTCATCGCTCTTCACTCCAACTCCAATGGCTACGATTGCTGCTCTCAGAAATTCTTCTTCTTCTTGCAGGCGTCTCTCCCTCTACCCCTTCTCCTCTCATCTCAACTCTTCCTTCTCCCGTTCACCTCTCTCTCAACCTTCTTTTCCCAATGACACCTCCTCCTCCTCCTCTTTTTCTTCCAACCCTTGGTGGAGATCCATGGCCACTTTCACCAGAACAAAACCTCACGTTAACGTCGGAACTATTGGACACGTGGATCACGGGAAGACCACACTCACTGCAGCAATCACCAAGGTGCTTGCGGATGAAGGGAAAGCTAAGGCTGTAGCCTTTGATGAAATCGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACAATTGCAACGGCACATGTTGAGTATGAGACCGCCAAAAGGCACTATGCACATGTTGACTGCCCTGGACATGCAGATTATGTTAAAAATATGATTACAGGAGCTGCCCAAATGGATGGTGGCATACTTGTTGTGTCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTCGATGATCCAGAGTTGTTAGAACTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCTATCATTAGAGGTTCAGCATTGTCTGCTTTACAGGGTACAAATGATGAGATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTGGATGAGTACATTCCCGACCCTGTTCGCCAGCTTGACAAGCCTTTCCTAATGCCAATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAGCAAGGGGTTATCAAAATTGGTGATGAAGTTGAGGTTTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGACATACAACGTGGTCAGGTCATTGCTAAGCCTGGTTCTTGTAAAACATACAAGAAATTTGAGGCAGAGATTTATGTACTCACAAAGGATGAGGGTGGACGACACACTGCTTTCTTCTCTAACTACAAACCTCAATTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGGTAATGCCTGGAGACAACGTTACTGCCACATTTGAATTGATTTCTCCTGTTCCACTTGAAGCAGGGCAAAGATTTGCCTTGAGAGAGGGTGGCAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAA 1629 0.4579 MVVCIYLFFGSGVVWCVLFLSFSSEKKWGLQELGRTNITGRCRAPILKPSLLVFSLCAVCSALLKPSFASATFFFFHSRASSLFTPTPMATIAALRNSSSSCRRLSLYPFSSHLNSSFSRSPLSQPSFPNDTSSSSSFSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKIGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSCKTYKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGKVELPENVKMVMPGDNVTATFELISPVPLEAGQRFALREGGRTVGAGVVSKVLS. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04516 542 PANTHER ELONGATION FACTOR TU-RELATED 149 541 - -
Seca1g04516 542 NCBIfam elongation factor Tu 146 541 IPR004541 GO:0003746|GO:0005525|GO:0006414
Seca1g04516 542 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 451 541 IPR009001 -
Seca1g04516 542 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 154 350 IPR000795 GO:0003924|GO:0005525
Seca1g04516 542 FunFam Elongation factor Tu 352 482 - -
Seca1g04516 542 PRINTS GTP-binding elongation factor signature 158 171 IPR000795 GO:0003924|GO:0005525
Seca1g04516 542 PRINTS GTP-binding elongation factor signature 222 232 IPR000795 GO:0003924|GO:0005525
Seca1g04516 542 PRINTS GTP-binding elongation factor signature 275 284 IPR000795 GO:0003924|GO:0005525
Seca1g04516 542 PRINTS GTP-binding elongation factor signature 202 210 IPR000795 GO:0003924|GO:0005525
Seca1g04516 542 PRINTS GTP-binding elongation factor signature 238 249 IPR000795 GO:0003924|GO:0005525
Seca1g04516 542 Gene3D Translation factors 486 541 - -
Seca1g04516 542 Pfam Elongation factor Tu C-terminal domain 447 540 IPR004160 -
Seca1g04516 542 Pfam Elongation factor Tu GTP binding domain 154 347 IPR000795 GO:0003924|GO:0005525
Seca1g04516 542 NCBIfam small GTP-binding protein domain 157 293 IPR005225 GO:0005525
Seca1g04516 542 SUPERFAMILY Translation proteins 351 446 IPR009000 -
Seca1g04516 542 Hamap Elongation factor Tu [tuf]. 145 542 IPR004541 GO:0003746|GO:0005525|GO:0006414
Seca1g04516 542 FunFam Elongation factor Tu 145 349 - -
Seca1g04516 542 CDD EFTU_III 448 537 - -
Seca1g04516 542 CDD EF_Tu 155 349 IPR041709 -
Seca1g04516 542 Pfam Elongation factor Tu domain 2 371 441 IPR004161 GO:0005525
Seca1g04516 542 CDD EFTU_II 357 445 IPR033720 -
Seca1g04516 542 Gene3D - 146 349 IPR027417 -
Seca1g04516 542 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 195 210 IPR031157 -
Seca1g04516 542 Gene3D Translation factors 352 482 - -
Seca1g04516 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 372 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04516 Seca-Chr1 146530986 146535432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04516 152 540 Eukaryotic Initiation Factors Gene Family AT5G60390 30.505 4.03e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04516 K02358 - gmx:100791600 790.415