Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04499 ATGCCCCTTCTCTTCTTTCTCTTCATCTTCCTCTTCACTTTCCCTTCCCTCTCCACCGCCACATGTCCCCTCAACATCACCGTCCTCCGCGTCGTCGGCGGCGGAAACAGACCCTCTTTGGATTCCGGCACACAGTGCCATTACATCCTCCAAGCCCTTCATCTTCTCCAAGCTGATTACCTTCGCCGAAGTGGTCTCTTCGTTCCTCCTCTAAACTCCTCTGAGTCTTGCTGGAACACCTTCCAATCCTTCATCAATGAATTCGACCCAACCTTCGATGTTCGCTCCTCTTGTGGCCTTCAAACCTCTTGGATCTCTCAGGGTTGCATGAACATCACCACCAAACAACAATTCGAAAATCGTATTCCCAACACCGCACTTCAACCCGTTCAAACAGATTGTAACCAATCCCTTGATAACAACGCTCCCTGTGCCCTTTGCACCACTAAATTATCAAACTTGCTCAATTATTTGACTGGAACAACAATTGGGAATGTTTCTGATTGCAGGGATTATATCTCTATTTATGCTGCTTCTCTCTCTGATCCCACTGACGCAGGGAATGCTAAGTGCTTGTTCGGCCTTGATTTTTCCTCTTCAGGTTCTAGTGGTAAGCGTAGAAAGATTGTTATTGCTGTTGTTTCTGTTTTCTGTGCGTTGGCTTTGTTAATATTTGTTGGGGTTTGGGGTTACTTGAGATGGAAGAGGAAGAAGCTTGAAAGGGAGAAGGGTATTATTGGTAGAGGGACTGAGATGGATTTGGTTTCTGGGTTGGATTCAATGAACCAGAGTACCACTTTGATTAGGTTCACATTTGATGAAATTAAGAAGGCAACTAGGAATTTCTCTAGGGATAATATAATTGGGATGGGGGGTTATGGGAATGTTTATAAAGGGGTGCTTTTGGATGGAAGTCAAGTTGCATTGAAAAGGTTCAAGAATTGTTCTGTTGCTGGGGATGCAAGCTTCACTCATGAAGTTGAGGTTATTGCAAGTGTTAGGCATATCAACCTTGTTGCCCTCAGGGGTTATTGTACTGCTACAACTAATTTAGAAGGTCACCAGAGGATTATTGTTACTGATTTGATGGAAAATGGGAGTCTTTATGATCATTTATTTGGTTCTTCAAAGAAGAAACTAACTTGGCCAATTCGTCAAAAGATTGCTTTAGGCACAGCTAAGGGGTTGGCTTATTTGCATTATGGGGCTCAGCCTTCCATCATTCATAGGGATATTAAAGCTAGTAACATACTCTTGGATGACAAGTTTGAAGCTAAGGTAGCAGACTTTGGGTTAGCAAAGTTCAATCCTGAGGGAATGACACATATGAGCACAAGAGTAGCTGGTACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAGTTGACAGAGAGGAGTGATGTCTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACCAATGATGATGGTCAACCTTCTGCTCTCACTGATTTGGCTTGGTCATTGGTTAGAAATGGTAGAGCTTTGGATGTTATAGAAGATGGTATGCCAGAACCTGGTCCACCAGAGGTTCTTGAGAAGTATGTGTTGGTTGCTGTACTATGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAAGTTGTTAAAATGCTGGAGACAGATGAATCAGTACCCTCAATACTGGAAAGGCCAATTCCTTTCATTGCTGGGAGGCTTGATATTGAGAAATCTGCCAGCAACTCAGGTCAGCTATGCAGTCCAACAGGTTATCAAGCATATGCATTACAAGCCGTTCCATGTCCACTCAACATCACCGTCCTCCGCTCCACACCCTCCTTGGACACCGCCACCCGCTGTCACTCCATCCTCCAATCCCTTCGTATTCTCCAATCCGATTACCTCCGCCGCACCGGATTCTTCCTCCCTCCTCCAAACTCCTCCTTCTCTTGCTGGAACTCTCTCCAATCTTTCATCAACCAATACGATATTCGCTCCTCCTGTGACCTCCCTTCCTCTTCCATCTCCCAAGGCTGCATGAACATCACCACCTTACAACAATTCCAATCACTTGCTCCTGCCACCGACCTTCAAGCCGTGCACTCAAATTGTAACCAATCTCTTGCTACTAATGCGCCCTGTGCACTCTGCACGACCACCTTGTCCAGGTTGGCGTTCTACTTCACAGGACCTTCCGCTGGGAAAATCGCTGATTGCAAGGCTATTGCCTCTATTTATGCCGCTTCTTTATCCGGTAATTACGACCAAACTGCTAAATGCTTGTTCAACCTCGAATTTTCCTCTTCTGGTAAGAAACCAAGGAATGTTGTTGTTATTGTGCTTGTTTCGGTTTTTAGTGTTTTAGGTCTGTTAGTATTTGCTGGGGTTTGGGTTTACTTCAAATTCAAGCGGAAGAAGAAGAAGAAGAAGAAGAAGGGTGTTGGTAGTATTAGTACTGATATGGGTTTGGATTTGATGAACCAGAGTACTACTTTAATTAGGTTTACATTGGATGAGATTAAGAAGGCAACTAGTAATTTCTCTGGCCAAAATATAATTGGGAGTGGAGGTTATGGGAATGTATTTAAAGGGGTTCTTCCTGATGGAAGTCAAGTTGCATTGAAAAGGTTCAAGAATTGTTCTGTTGCTGGGGATGCAAGTTTCACTCATGAAGTTGAGGTTATTGCAAGTGTTAGGCATGTCAACCTTGTTGCCCTCAGGGGTTATTGTACTGCCACCACTAATTTAGAAGGGCACCAGAGGATTATTGTTACTGATTTGATGGAAAATGGGAGTCTTTATGATCATTTATTTGGTTCTTCAAGGAAGAAGCTAGCTTGGCCAATTCGTCAAAAGATTGCTCTTGGCACTGCTAAGGGGTTGGCTTATTTACATTATGGGGCTCAGCCTTCCATCATTCATAGGGATATCAAAGCTAGTAACATACTCTTGGATGACAAGTTTGAAGCTAAGGTAGCAGACTTTGGGTTAGCAAAGTTCAATCCTGAGGGAATGACACATATGAGCACAAGAGTAGCTGGTACTATGGGGTATGTTGCTCCGGAGTATGCTTTGTATGGGCAGTTGACAGAGAGGAGTGATGTCTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACCAATGATGATGGCCAACCTTCTGCTCTCACTGATTTGGCTTGGTCATTGGTTAGAAATGGTAGAGCTTTGGATGTTATAGAAGATGGTATGCCAGAACCTGGTCCACCAGAGGTTCTTGAGAAGTATGTGTTGGTTGCTGTACTATGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAAGTTGTTAAGATGCTGGAGACAGATGAATCAGTACCCTCAACACTGGAACAGCCAATCTCATCTATTGCTGATATTGAGAAATGTTTCTCAAGTGGTAACTAG 3462 0.4365 MPLLFFLFIFLFTFPSLSTATCPLNITVLRVVGGGNRPSLDSGTQCHYILQALHLLQADYLRRSGLFVPPLNSSESCWNTFQSFINEFDPTFDVRSSCGLQTSWISQGCMNITTKQQFENRIPNTALQPVQTDCNQSLDNNAPCALCTTKLSNLLNYLTGTTIGNVSDCRDYISIYAASLSDPTDAGNAKCLFGLDFSSSGSSGKRRKIVIAVVSVFCALALLIFVGVWGYLRWKRKKLEREKGIIGRGTEMDLVSGLDSMNQSTTLIRFTFDEIKKATRNFSRDNIIGMGGYGNVYKGVLLDGSQVALKRFKNCSVAGDASFTHEVEVIASVRHINLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKKLTWPIRQKIALGTAKGLAYLHYGAQPSIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQTNDDGQPSALTDLAWSLVRNGRALDVIEDGMPEPGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSILERPIPFIAGRLDIEKSASNSGQLCSPTGYQAYALQAVPCPLNITVLRSTPSLDTATRCHSILQSLRILQSDYLRRTGFFLPPPNSSFSCWNSLQSFINQYDIRSSCDLPSSSISQGCMNITTLQQFQSLAPATDLQAVHSNCNQSLATNAPCALCTTTLSRLAFYFTGPSAGKIADCKAIASIYAASLSGNYDQTAKCLFNLEFSSSGKKPRNVVVIVLVSVFSVLGLLVFAGVWVYFKFKRKKKKKKKKGVGSISTDMGLDLMNQSTTLIRFTLDEIKKATSNFSGQNIIGSGGYGNVFKGVLPDGSQVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSRKKLAWPIRQKIALGTAKGLAYLHYGAQPSIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQTNDDGQPSALTDLAWSLVRNGRALDVIEDGMPEPGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSTLEQPISSIADIEKCFSSGN. 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04499 1153 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 811 930 - -
Seca1g04499 1153 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 247 361 - -
Seca1g04499 1153 CDD STKc_IRAK 857 1126 - -
Seca1g04499 1153 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 363 564 - -
Seca1g04499 1153 SUPERFAMILY Protein kinase-like (PK-like) 833 1132 IPR011009 -
Seca1g04499 1153 Gene3D Phosphorylase Kinase; domain 1 811 930 - -
Seca1g04499 1153 Gene3D Phosphorylase Kinase; domain 1 251 361 - -
Seca1g04499 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672|GO:0006468
Seca1g04499 1153 ProSiteProfiles Protein kinase domain profile. 282 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04499 1153 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Seca1g04499 1153 ProSiteProfiles Protein kinase domain profile. 851 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04499 1153 ProSitePatterns Protein kinases ATP-binding region signature. 857 879 IPR017441 GO:0005524
Seca1g04499 1153 SUPERFAMILY Protein kinase-like (PK-like) 264 567 IPR011009 -
Seca1g04499 1153 SMART serkin_6 282 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04499 1153 SMART serkin_6 851 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04499 1153 CDD STKc_IRAK 288 557 - -
Seca1g04499 1153 Pfam SPARK 601 735 IPR043891 -
Seca1g04499 1153 Pfam SPARK 18 169 IPR043891 -
Seca1g04499 1153 Gene3D Transferase(Phosphotransferase) domain 1 363 565 - -
Seca1g04499 1153 Gene3D Transferase(Phosphotransferase) domain 1 932 1139 - -
Seca1g04499 1153 Pfam Protein tyrosine and serine/threonine kinase 285 556 IPR001245 GO:0004672|GO:0006468
Seca1g04499 1153 Pfam Protein tyrosine and serine/threonine kinase 855 1125 IPR001245 GO:0004672|GO:0006468
Seca1g04499 1153 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 932 1133 - -
Seca1g04499 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Seca1g04499 1153 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 655 1138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04499 Seca-Chr1 146330701 146344044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04499 3 600 Receptor kinase-like Gene Family AT2G48010 62.046 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca1g04499 PK_Tyr_Ser-Thr 5.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04499 - - gmx:100786298 973.385