Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04496 ATGATATTTTTCCTGCCTCATAAAGTTTGTTACTTTTGTGGTGGATTTGTCATTTTTTTTTCTTTACTAGAGAATTCTGGAATTTTGGGTTTGTGGGTCTCAAAAATGAAGGACAAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATTTCAAGAGCTCAGAATCAGAAACAAGTTCTTCTAAAGAACCAACTTTGGATTCTGAGTCTCAAGATAAGTACTCAAAACCTGGTTCTAGATGGCATGCATTTCTCCAATTGTTGAAGACCAAATCAAAGAAGCCTATATCCACATTGCATCCTCTCAGTGTCCTCAAGCTCTCAAGAAGAATGAGCAGTAGCATGAGGGAGACTATTCTTCCAAGTTGTAGCATAGATGCAGAATCTTTCTTGCAAAAGTCACCATGGAGGATCTTTACCCAACATGAGATACAAATTGCAACCAATTATTTCAGCCAAGAAAATTTTATTGGGAAAGGTGGTTATGCTGATGTTTACAAAGGGTGTTTACCAAATCATCAACTAGTAGCAATTAAAAGGCTAACAAGAGGAACAACAGATGAAACCATAGGGGATTTCTTATCAGAACTTGGCATAATGGCTCATGTAAATCACCCCAATACAGCTAAGTTGGTTGGTTATGGGGTGGAAGGAGGAATGTATCTAGTGCTTGAATTGTCTGAAAAAGGAAGCTTAGCTTCAGTGCTCTATGTGCTATTAGGTTCCAAGGAGAAATTACCATGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTGAAGGTATATTATATCTTCATGAAGGTTGTCCAAGAAGAATTATCCATAGAGATATAAAAGCTGCAAATATCTTGCTAACTGAGAACTTTGAGCCACAGATTTGTGATTTCGGACTAGCAAAATGGCTACCAGAGAATTGGACTCACCACAGTGTTTCAAAATTTGAAGGAACTTTTGGATACCTTGCTCCTGAATACTTGCTTCATGGGATAGTAGACGAGAAAACAGATGTATTTGCTTTTGGGGTGTTGCTATTAGAATTAGTCACGGGGCGGCGAGCACTTGATTGTTCACAACAAAGTCTTGTTTTATGGGCAAAACCTTTGCTGAAGAAGAATTATATTAGGGAGCTGATTGATCCTTCACTAGCCGATGACTTTGACTGTCGGCAGATTAATATTATGCTCTTGGCAGCTTCATTATGCATTCAACAATCCTCTATTCGTCGTCCATCTATCAGACAGGTTGTACAGCTTCTGAATGGTAACCTTAGCTGCTTTAAGTACACAAAGAAATCTCGACTTCCATTTTTCTGA 1314 0.3874 MIFFLPHKVCYFCGGFVIFFSLLENSGILGLWVSKMKDKVDSPVGVLEDYFKSSESETSSSKEPTLDSESQDKYSKPGSRWHAFLQLLKTKSKKPISTLHPLSVLKLSRRMSSSMRETILPSCSIDAESFLQKSPWRIFTQHEIQIATNYFSQENFIGKGGYADVYKGCLPNHQLVAIKRLTRGTTDETIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMYLVLELSEKGSLASVLYVLLGSKEKLPWSIRQKIALGTAEGILYLHEGCPRRIIHRDIKAANILLTENFEPQICDFGLAKWLPENWTHHSVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVTGRRALDCSQQSLVLWAKPLLKKNYIRELIDPSLADDFDCRQINIMLLAASLCIQQSSIRRPSIRQVVQLLNGNLSCFKYTKKSRLPFF. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04496 437 SUPERFAMILY Protein kinase-like (PK-like) 131 419 IPR011009 -
Seca1g04496 437 PANTHER OS08G0249100 PROTEIN 39 428 IPR046958 -
Seca1g04496 437 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 228 433 - -
Seca1g04496 437 Gene3D Phosphorylase Kinase; domain 1 123 225 - -
Seca1g04496 437 ProSitePatterns Protein kinases ATP-binding region signature. 157 179 IPR017441 GO:0005524
Seca1g04496 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Seca1g04496 437 MobiDBLite consensus disorder prediction 56 76 - -
Seca1g04496 437 SMART serkin_6 151 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04496 437 Pfam Protein kinase domain 152 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04496 437 ProSiteProfiles Protein kinase domain profile. 151 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04496 437 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 122 225 - -
Seca1g04496 437 Gene3D Transferase(Phosphotransferase) domain 1 228 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04496 Seca-Chr1 146273493 146277302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04496 139 422 Receptor kinase-like Gene Family AT1G34210 41.581 2.61e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca1g04496 Pkinase 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04496 - - gmx:100802873 652.899