Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04470 ATGGACAGGACAGACACTCAAGACTTCACGAACGTTGATTCTTTCTCTCAGCTCCCCTTTATCCGCCCTACTAAAGAAAAAGGCATTCGACTCTTCGGCATAGAATTCGGCGACGCGCCTAGTGTTGCCGCCGGTGAGTCCAAGTCAACGGAGACAACCACCACCTGCAATGCCTTTAAGCTTGATAGTGATAACAATAAGGACAATAACAACACAGAGAATGAGAATAGCCGAAGATTTGAATGCCATTACTGTTGTAGAAACTTCCCCACTTCTCAGGCGTTGGGTGGCCATCAAAACGCACACAAACGAGAACGCCAGCAAGCGAAACGACCGTACCTCCACCCAGCTATGGTTCACAGTAGCTTCTCTGATTCTCACCTGTATGGCCTCATGAACTACAGGCAGTGTGATCCTGCAAGGTTTACTAACTACAGATTCGGTTCTGCTCCCTCGACGGGAATGATGTCTTATCCAACATGGAATAGTAATACTAACCCGTCAAGTGCTATGATCAGTGGTGGTGGAAGGTTCTATAGAAGCTCCTATTCTCATCATAACAGCCCCTTGGCCTTGCAGCTGCGAGTTCCCACTGCCACTAGTGATGTGGTCCAAAATAACCCTATCTTCAACCATCAAAGCTTGTTGCATCCGTTGCCTTTGTTTTCTAGCGAGGAAATGAACACGAGGATGGGACCCTTAATACGGGCCAGTCCCTCTGGTTCACGGTATGTTTATGACTCCAAACCCAGCGTGAATGACCATGTGAGTTTGGATCTTCATCTGTAA 789 0.4753 MDRTDTQDFTNVDSFSQLPFIRPTKEKGIRLFGIEFGDAPSVAAGESKSTETTTTCNAFKLDSDNNKDNNNTENENSRRFECHYCCRNFPTSQALGGHQNAHKRERQQAKRPYLHPAMVHSSFSDSHLYGLMNYRQCDPARFTNYRFGSAPSTGMMSYPTWNSNTNPSSAMISGGGRFYRSSYSHHNSPLALQLRVPTATSDVVQNNPIFNHQSLLHPLPLFSSEEMNTRMGPLIRASPSGSRYVYDSKPSVNDHVSLDLHL. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04470 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Seca1g04470 262 SUPERFAMILY beta-beta-alpha zinc fingers 77 107 IPR036236 -
Seca1g04470 262 MobiDBLite consensus disorder prediction 44 75 - -
Seca1g04470 262 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Seca1g04470 262 PANTHER ZINC FINGER PROTEIN GIS 1 262 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Seca1g04470 262 MobiDBLite consensus disorder prediction 45 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04470 Seca-Chr1 145844280 145846295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04470 4 262 C2H2 Transcription Factor Family AT3G58070 39.350 4.22e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04470 - - jre:109011926 239.965