Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04460 ATGTTGGGTGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTCAATCCTGTGGACAAGCGCACAACTATTACCTACATTGATAGCAATGGTGAATGGCACAGAAGCAGCAAAGGTGCTCCTAAGCAAGTAAGGCTATATAACTCATATGCATCAATATAG 177 0.452 MLGDPKEARAGITEVHFLPFNPVDKRTTITYIDSNGEWHRSSKGAPKQVRLYNSYASI. 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04460 58 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 3 49 IPR023299 GO:0000166
Seca1g04460 58 PANTHER CALCIUM-TRANSPORTING ATPASE 1 49 - -
Seca1g04460 58 Gene3D - 1 55 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04460 Seca-Chr1 145582423 145582683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04460 1 49 Primary Pumps ATPases AT2G07560 87.755 1.12e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04460 K01535 - aew:130792209 100.138