Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04446 ATGGTGGATCAATTCATGGAGAATTCGTTCCTATCTGCTTCACGCGAAATCGGAACTGGAGTTCGTCGTGGCTCGGATGCAAAAGAGACAACGGATGATGCGTTTCTGTGTGTGGACATGACCGGGCTTGGCAAGGAAGATGTGAAGATCTCGGTGGACCTCACTGGTTGCTACTACCAAATTACCATTAAAGGTTTCGTGTACCAACTGTTTGATCAAATGCTTGAAAGGAATGTGCAACAACTGTTTGATGAAATGGCTGATAGGGATGTGCAGACACTATTTGCTGAAATGCCTAAAACTATTTTTGAATCGTTTCAAATTGCTTCTCACCTTCCATTTGATGGAATAATTGCAGCAATTATGCCTTGTTCTGTCATGACCTTTGCAGATTATGGTAAATCCATAATGGTTCCTTCACTCCTGAGAGGATTGAAGTACATACACTCTGCCAGCGTTTTGCACCAAGATCTAAAACCAAGCAATTTAATTCTAAATTGTTCTGAATATACTGCAGCTATTGATATATGGTCGGTTGGTTGCATTTTGATGGAAATAATCGTTTCAGGTCTATCTTTGACGGTTGCTACATATTCAGTCGGCCATGTCTCTGGTGGCCATTTTAATCCTACAGTCATAATTGCCTTGGCCGTTGTCCGAAAAATTCAATTGGAACTTGTGCCTACTTATGTGTTGTGCCAGTTGATTGGTTCTAAGAAGTTCTCAGGAATTAGTCAAATGATATGTTTCGAAATAGATAATGAGTCAGAAATTTTGGGAATGGGCAATTGGAATGAGAATGAAACAAGGGGATTATCTTCGGATCTTGTTGGAGATTCAAGGTGGACTTCAAATTCAATTGAGGGTGGAAGCTCTCCTGAGAAGCTTGTTTCTTGTGGAAATGTTGTCTCATGGACTTCGTTAATGACAGGCTGTGGCATGAATGGTCGTGGCAATGATGTTCTATGGGTTTTTGATGAGATGAGGAAAGTGGCTTTAGTGCCTAGAATGTGCTGCAACTGTTTTTATTTTCCTTTCTTTTTAGTTGAATTCCTCTATTGGTTTCAAGTTGGTATTGGTTGA 1083 0.4035 MVDQFMENSFLSASREIGTGVRRGSDAKETTDDAFLCVDMTGLGKEDVKISVDLTGCYYQITIKGFVYQLFDQMLERNVQQLFDEMADRDVQTLFAEMPKTIFESFQIASHLPFDGIIAAIMPCSVMTFADYGKSIMVPSLLRGLKYIHSASVLHQDLKPSNLILNCSEYTAAIDIWSVGCILMEIIVSGLSLTVATYSVGHVSGGHFNPTVIIALAVVRKIQLELVPTYVLCQLIGSKKFSGISQMICFEIDNESEILGMGNWNENETRGLSSDLVGDSRWTSNSIEGGSSPEKLVSCGNVVSWTSLMTGCGMNGRGNDVLWVFDEMRKVALVPRMCCNCFYFPFFLVEFLYWFQVGIG. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04446 360 Pfam Major intrinsic protein 182 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g04446 360 Gene3D Transferase(Phosphotransferase) domain 1 128 166 - -
Seca1g04446 360 NCBIfam pentatricopeptide repeat 303 330 IPR002885 -
Seca1g04446 360 SUPERFAMILY Protein kinase-like (PK-like) 140 191 IPR011009 -
Seca1g04446 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Seca1g04446 360 PRINTS Major intrinsic protein family signature 226 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g04446 360 PRINTS Major intrinsic protein family signature 189 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g04446 360 Gene3D Glycerol uptake facilitator protein. 167 270 IPR023271 -
Seca1g04446 360 SUPERFAMILY Aquaporin-like 182 240 IPR023271 -
Seca1g04446 360 Gene3D Tetratricopeptide repeat domain 294 342 IPR011990 GO:0005515
Seca1g04446 360 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Seca1g04446 360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 67 166 - -
Seca1g04446 360 Pfam PPR repeat 303 330 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04446 Seca-Chr1 144082407 144083489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04446 140 187 MAP Kinase Gene Family AT1G01560 47.126 8.61e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca1g04446 MIP 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04446 K09874 K13993 gmx:100798380 86.2705