Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04418 ATGAATGGAATAAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGTTGAAAAATCAATATACTTCTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGTAAAAGGTAGAAGGGTGCGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAAATCATTTGATCTATGGACAGCATCGTTGTGGTAAAGGCTGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATAGTTTCTGGTACAGAAGTTCCGATAAAAATGGGAAATGCCCTACCTTTAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCGGCAACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTCCGGATCTAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTACTAAATAG 1041 0.4111 MNGIKYAVFTDKSIRLLLKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPVKGRRVRPIMGHTMHYRRMIITMAIHLYKTSTPSTRNGNHLIYGQHRCGKGCNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNSGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRTK. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04418 346 ProSitePatterns Ribosomal protein L2 signature. 288 299 IPR022671 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 Gene3D - 2 84 IPR012677 -
Seca1g04418 346 SMART Ribosomal_L2_2 107 183 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 SUPERFAMILY Nucleic acid-binding proteins 80 190 IPR012340 -
Seca1g04418 346 Gene3D - 183 275 IPR014722 -
Seca1g04418 346 SMART Ribosomal_L2_C_2 189 323 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 FunFam 50S ribosomal protein L23, chloroplastic 1 84 - -
Seca1g04418 346 Gene3D Ribosomal protein L2, domain 3 276 345 IPR014726 -
Seca1g04418 346 FunFam 50S ribosomal protein L2, chloroplastic 79 179 - -
Seca1g04418 346 NCBIfam 50S ribosomal protein L2 78 277 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Seca1g04418 346 Gene3D - 90 182 IPR012340 -
Seca1g04418 346 Pfam Ribosomal protein L23 4 80 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 Hamap 50S ribosomal protein L23 [rplW]. 1 93 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 SUPERFAMILY Translation proteins SH3-like domain 224 343 IPR008991 -
Seca1g04418 346 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 80 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 PANTHER RIBOSOMAL PROTEIN L2 98 344 IPR002171 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 FunFam 50S ribosomal protein L2 270 346 - -
Seca1g04418 346 Pfam Ribosomal Proteins L2, RNA binding domain 108 183 IPR022666 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 MobiDBLite consensus disorder prediction 330 346 - -
Seca1g04418 346 MobiDBLite consensus disorder prediction 295 346 - -
Seca1g04418 346 Pfam Ribosomal Proteins L2, C-terminal domain 278 321 IPR022669 GO:0003735|GO:0005840|GO:0006412
Seca1g04418 346 Pfam Ribosomal Proteins L2, C-terminal domain 224 277 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04418 Seca-Chr1 143554089 143555880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04418 118 305 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 28.125 3.11e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04418 K02886 - rcu:11542361 478.404