LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g04405	ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGGATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACTGGTACAGTACTTCAAGTAGGCGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTGGAATTTGAAGAGGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCTATTGATGGTCGGGGAGAAATTTCATCTTCGGAATCTCGGTTAATCGAATCTCCGGCTCCCGGTATTATTTCGAGACGTTCTGTATATGAGCCTCTTCAAACAGGACTTATTGCTATTGATTCGATGATCCCTATAGGGCGCGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGCTGTTGGTCAAAAAGCATCTTCTGTAGCTCAAGTGACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGCCACACTTTAATCATTTATGACGATCTCTCTAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCGCCGGGTCGCGAAGCTTATCCGGGAGATGTTTTTTATTTGCATTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACTCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACTGATGGCCAAATATTTTTATCCGCCGATCTATTCAATGCTGGAATCAGACCTGCGATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGGTAAGTTAAAATTAGAATTGGCACAATTTGCAGAGTTAGAAGCTTTTGCACAATTCGCTTCTGATCTTGATAAAGCTACTCAAAATCAATTGGCAAGAGCCCCTCTCACTGTAGAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAAGGAAATTTCTCGTTGAGTTACGTGCTTACTTAAAAACGAATAAACCTCAATTCAACGAAATCATATCTTCTACCAAGACATTCACTGGGGAGGCAGAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTTTTTTTACTCCAGGAACAAGTAGAAAAAAATTGA	1212	0.3985	MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTAVGQKASSVAQVTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARAPLTVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFNEIISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKN.	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g04405	403	CDD	F1-ATPase_alpha_CD	69	274	IPR033732	GO:0032559
	Seca1g04405	403	Pfam	ATP synthase alpha/beta family, beta-barrel domain	29	58	IPR004100	GO:0046034\|GO:1902600
	Seca1g04405	403	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	71	277	IPR027417	-
	Seca1g04405	403	Gene3D	-	279	394	IPR038376	-
	Seca1g04405	403	Gene3D	-	75	155	IPR027417	-
	Seca1g04405	403	PANTHER	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	2	58	IPR005294	GO:0015986\|GO:0045261\|GO:0046933
	Seca1g04405	403	Gene3D	-	156	278	IPR027417	-
	Seca1g04405	403	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	157	271	IPR000194	GO:0005524
	Seca1g04405	403	SUPERFAMILY	C-terminal domain of alpha and beta subunits of F1 ATP synthase	279	393	-	-
	Seca1g04405	403	SUPERFAMILY	N-terminal domain of alpha and beta subunits of F1 ATP synthase	11	68	IPR036121	GO:0046034\|GO:1902600
	Seca1g04405	403	ProSitePatterns	ATP synthase alpha and beta subunits signature.	262	271	IPR020003	GO:0005524
	Seca1g04405	403	Gene3D	-	1	74	IPR023366	-
	Seca1g04405	403	Pfam	ATP synthase alpha/beta chain, C terminal domain	278	389	IPR000793	GO:0015986
	Seca1g04405	403	CDD	ATP-synt_F1_alpha_C	282	394	IPR000793	GO:0015986
	Seca1g04405	403	FunFam	ATP synthase subunit alpha, mitochondrial	152	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g04405	Seca-Chr1	143503917	143505449	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g04405	166	277	Primary Pumps ATPases(2)	AT4G38510	35.484	1.32e-12	67.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g04405	K02111		-	gmx:121173224	655.981