Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04403 ATGACAAGCTCTCTCATTAAGGAATTATTTCCTACAAAAGAAGACTGGAGACTTAAGGTAAAGGTAAGCAGATTGTGGGATGTTCCAAGACGTGATTCTAAAGGGGTTGCGGCTGTCAACATGATACTCATTGATGAGGAGGGCAATAAGATTCAAGCAAGCATATTTCAGCCAGAGCTAATATCTAAATTTGAATCTTGCATCAATGAGGGGAATTGTTATAACATTGAAAATTTGAGCATTGGAGAAAATTCTGGAAATTATAAATCAACTAAACATCCATACCGCATCACTTTTGGATTTGAAACAAAGGTTACACCATGTGAAGCTGTCATCCCTGATTATGCATTTGACTTTGCTCCTTTTGATAAAATTCTATCAGAGAAAAATCCTATGGGACATTTAATTGATATCATTGGAACAATAGCTGAAATTAGTCAACTACAACAATTCAACTTTGAGGGAGAAAGTGGCAAAAGACTAGAGATTAAATTGGCTGATGAAAGAGATAACTTTGTTAGATGCACACTATTTGGAGACTCTGTTGTAGATGTTTTTAATTCTGTATCTGCTGGTAGTGATGACACAAAGATCATGGTTATGCAACTAGCACGAATTAAACCTTTCAAAGGACAAAACTACTTGGCTACATCATGGAATACAACGAAAATATTCATCAATCCAAATATTCCAGAAGTAGAAAAGTTTAAGAATATGTTAGGGGTATCCCTGCCAAATTTGACTCCAACACAATCCAACACTCAGTTATCAAGTGGGTCTTCATCTTACATAGATGAACTTGGAAACCCTGCTCTCAGACGAACATTAATAGAAATTCGAGATGCAAAACAGACAGTACGAGACAAGGATGGTTTCCTATTATGTACCAAATGTCACAAGACTCCATCTAAAGTTATCCCAAGATTCCGGACGCATTTAATGGTGATGGATCAAACTGGAAGTGCTTGCTTTGTCCTCTTTGAGAAACAAGGTGTTGAACTATTCAACAAGACAGCAAATGAACTACGTGAAGAGATGGTCAAGGATGGTAATGACTCTGCATTTCCACCTATTTTGGAAACATTAGTGGGAAGAAAGTTTGTTTTCATGATTGAAATCAATGCACACTTTAACCTGGAGAAGAAGTCAAATAACTACACAATCTTAAAGCTTTCAGATGACACTCGTGTAATACAAGAATTTGATACCTCTTCAGTTGTTTCACAGGAATACCAAGGTCCTGCAATCTCATCCACTCAAGAACAAGACAACTTTCAGAGCAGTGTACACAATGAAATTGGACAGGCTTCACTTACAGCAGAAAATGACACGGACATCTGCTCAAAGACTATGATCACACCTCACAAAAGAAAGAAAAAAAGCAACAGCTCAGATTGTGAAATTACTGGAGTCAATCAGGTGCTAAGTCCAAAGCTTTCGACAACAAAGGCATCTGTTCGAGTTAAAATTGAGAAGAAAAAATGA 1485 0.3697 MTSSLIKELFPTKEDWRLKVKVSRLWDVPRRDSKGVAAVNMILIDEEGNKIQASIFQPELISKFESCINEGNCYNIENLSIGENSGNYKSTKHPYRITFGFETKVTPCEAVIPDYAFDFAPFDKILSEKNPMGHLIDIIGTIAEISQLQQFNFEGESGKRLEIKLADERDNFVRCTLFGDSVVDVFNSVSAGSDDTKIMVMQLARIKPFKGQNYLATSWNTTKIFINPNIPEVEKFKNMLGVSLPNLTPTQSNTQLSSGSSSYIDELGNPALRRTLIEIRDAKQTVRDKDGFLLCTKCHKTPSKVIPRFRTHLMVMDQTGSACFVLFEKQGVELFNKTANELREEMVKDGNDSAFPPILETLVGRKFVFMIEINAHFNLEKKSNNYTILKLSDDTRVIQEFDTSSVVSQEYQGPAISSTQEQDNFQSSVHNEIGQASLTAENDTDICSKTMITPHKRKKKSNSSDCEITGVNQVLSPKLSTTKASVRVKIEKKK. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04403 494 CDD RPA1_DBD_B_like 137 240 - -
Seca1g04403 494 Pfam Domain of unknown function DUF223 41 129 IPR003871 -
Seca1g04403 494 Gene3D - 111 243 IPR012340 -
Seca1g04403 494 Gene3D - 278 401 IPR012340 -
Seca1g04403 494 CDD RPA1_DBD_A_like 17 105 - -
Seca1g04403 494 PANTHER OS03G0429900 PROTEIN 1 254 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca1g04403 494 SUPERFAMILY Nucleic acid-binding proteins 117 248 IPR012340 -
Seca1g04403 494 Gene3D - 4 110 IPR012340 -
Seca1g04403 494 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Seca1g04403 494 SUPERFAMILY Nucleic acid-binding proteins 285 392 IPR012340 -
Seca1g04403 494 Pfam Replication factor-A C terminal domain 283 392 IPR013955 -
Seca1g04403 494 Pfam Replication protein A OB domain 132 216 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04403 Seca-Chr1 141907936 141911420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04403 9 382 Core DNA Replication Machinery Family AT5G08020 23.317 4.23e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04403 - - soe:130460986 214.157