Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04381 ATGGCAAGATGGAGGTATTGTTACAAGGAAGTGGCTCCATTTTCTGCATTGGTTATAGTGCAGTTTACTGAGGTTGGCGTCAACATTCTATTCAAGGAAGCTACTATGAAGGGGTTGAGCTACTATGTTTTCATCCTCTATTCACTTTCTCTCTCCACTCTTATTCTGCTTCTCCCTTTGCCCTTCATCTTCCGCAGGTCAACTGGACTTCCTTCATTAAATTTGTCGATCCTCTGCAAAGTTTTCTTCCTGGGATTGCTTACATTTTCAGCTCTCATATGTGGATATAAAGGTATTGAATACAGCTCGCCAAGTCTTGCGTCTGCTGAGAGCAATCTCGCTCCGGCTTTTATCTTCATACTTGCTGTCCTTTTCAGGATGGAAAAGGCAGCTTTAAGAAGTTCTAGCACTCAGGCCAAAATCTTGGGTTCAATAGTATCAATAGCAGGTGCGCTCATAGTTGTTCTCTATAAAGGACCTACAATCTTAGAAGCTGCATCTCAAACTCCTTCACTTGGCTCTTTGCAAAGGAATTGGGTTCTAGGCGGCTTTCTACTTGCGGTTGCATATATTCTAGTCTCAATCTGGTACATCGTCCTGACCCATGTTATGAAATTGTATCCAGCAGAGATGGTTGTGGTGTTCTTGTGCAACTTGTGTGGGACTATCATAGCTGCCCCTGTTTGCTTTCTAGCAGAAGGAAACTTGAGCGCTTGGAAACTAAAACCTGATATAACACTGGTGGCTGTTTTATACTCAGCATTCTTTAGCACATTCTTCAGCACTGTTGTTCACACATGGGGCCTACATGTGAAGGGTCCTGTATATGTATCAATCTTCAAGCCCCTCTCAATTGCCATAGCTGCTGCTATGAGTGTCATATTCCTTGGTGAACCTTTGTATCTAGGAAGTGTTGTTGGAGCAGTAATACTATGTACTGGGTTTTATGCTGTTATATGGGGGAAAGCAAAGGAAGAGGAATTTAGTGATCAGGGCTTTGACATAGGTGGTATAGGTTCAACTCCACCATCCGATAGTAACACTCCTTTTCTTTCCAACGTGAAAATCACATATAACGATTGTTGA 1086 0.4245 MARWRYCYKEVAPFSALVIVQFTEVGVNILFKEATMKGLSYYVFILYSLSLSTLILLLPLPFIFRRSTGLPSLNLSILCKVFFLGLLTFSALICGYKGIEYSSPSLASAESNLAPAFIFILAVLFRMEKAALRSSSTQAKILGSIVSIAGALIVVLYKGPTILEAASQTPSLGSLQRNWVLGGFLLAVAYILVSIWYIVLTHVMKLYPAEMVVVFLCNLCGTIIAAPVCFLAEGNLSAWKLKPDITLVAVLYSAFFSTFFSTVVHTWGLHVKGPVYVSIFKPLSIAIAAAMSVIFLGEPLYLGSVVGAVILCTGFYAVIWGKAKEEEFSDQGFDIGGIGSTPPSDSNTPFLSNVKITYNDC. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04381 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 158 - -
Seca1g04381 361 Pfam EamA-like transporter family 182 319 IPR000620 GO:0016020
Seca1g04381 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 324 - -
Seca1g04381 361 PANTHER WAT1-RELATED PROTEIN 13 330 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04381 Seca-Chr1 138053856 138056655 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04381 4 326 Nodulin-like Gene Family AT5G40240 56.928 1.90e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04381 - - cave:132182283 440.269