Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04377 ATGCACGGGGAATTTGATCCCGCTGTTCTGGCCTCTTTGCCCCCATCAATGCAACTGGACCTCCTTGTTCAGATGAGAGAGCGATTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGACGCGAAATAGATGAAGTGCAGAAAACTGCTGTTGGAGGAGGAGTAGGTGGTGTACAGACATCGCGGATTGCATCTGAAGCCAACCGGGAATATATATTCTCATCATCTTTTACTGGTGACAAACAAGAACTTACCTCCACCAGATTAGAGAAAAATAAAGAAGATAAAAACCAAAAGTCACAAGGAACACATTCTTCACAGAATTTTACAAATAGCATTGCAGCAGGCAGTGATTCTAATAATTCAGGTGGATTGATTTCCAGTGAACCGGGTGAGCCTGTTGATGAAAGTATTCAGACATATCTAGATGAGAGGGGTCGATTTCGAGTTAGTAGATTGAGAGCTATGGGGATGCGTATGACCCGTGATATTCAAAGGAATTTGGATTTGATGAGGGAGATTGAGCAGGAAAGAACATTTGTCAACAAGGCAGCAATTATTGAAACTCTGCTAAATGCAGAGAATAATGGTACATCAGAATGTTCCGGGAACCAGCATATAGGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAAAATGTGCAAAATGAGCAATCAAAGCTTGATGGGGATACTTCTATAGAGGTATCCTTTGAATATGATTGCAAGAATAAGCTTGTAAGTGGTGAGGATGATATATTTGCCAGTTTAGTAGGAGGAAATCCAGTGACACTCTTTTATGCTGATGACACTGCAGCAAAAGTGCAACCTTCTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGCCCTGTTCAAGGCAGGAACACCATTTTTCCTGGACATAATAATATGGAATTGAAGTCTTCTGTTGCAGATGAAAATATTAATAATATTAATAATGAAAGTGAAATAGAATGGGAGGAAGGAGATTGTGATGGTGCTAAAAGCCCCTTAGTGTGTCCAGCTGAGTCAAGAAAATTGGCATCTCGAGGGCACTTGGAGGAGGAGTCTGATTTGCAAGAGGCAATAAGGAGAAGTCTTGAGAATACAGGGGATCAGAAACTTAAATGCATGTCAACCTTAGATGAGCATTCAAATTCTTATGAGAACAAATTGGACTCTGAATTAGAACATGGTGATAATCTGTATTGTTCTGGTCCAATGGATTTAAATGACAACAGTATGGGTGGTTCCACTTTGCCTAGGAAAGGTGGTACTGAACAAAATGAATTACATGAAATTGTAGATGGAGATAAAATACATGATTATGTTACTAAAAATAACCCACAGACTTTCCATTTGCGTGGAAGTCAGTCAAAGTCACCTGTGACATTTAATTCCAATAAAACAGAGATATTGATTGACAGACCTTACAGACTGGATATATGCACTTGTTCTGAAGATTCAATGTCAGATGCAAATGTCACAACGAAGGATGAGGTTCCAATGGTTGCAAAGCAATCGTTGTCCAAGGTTGATCCACTTGGCGTGACTGAAGAGGAGAAGAACTATATTAATGATTCTGAACTCTTGAGTAATTCTACTGACAATACAAAGCCTTCTATTCTTTTGATGGAGTCATCCTTGAAAGGATCTACAGAAGGCCTTGATATTGAGCCAAAATTTCCTTCAGTGGACAATGATGGAAATTTATCTGAGGAAAGGGATAGTAACCTTGCCAAAGATGCAGTGAACACCCCAGGAGATTTCCCTGCACAGTTAGCTGAGATTAGATTGGAGGATGAAATGGAAATTCTTGACAGAGAATATATCAACCTGGAAAATGAACAGAGGAAGCTTGAGCGTAATGCAGAATCTGTTAACAGTGAATTATTCACAGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCTGAAGCACAGTGTGCTTACTTGGAACTTGCAAAACTAGTTGATGGTGTTGTTACTGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTATAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGAATGACCAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTGTAAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGCAGTGGGTTGAGTCACCAGATCCAACCATCCTAGGACGGTTGGATGCAAAAAATAGATCCAATACCAGAAAGAAAGGGTCAAAAGTTAAAGAAAAGATAAATACGTCAAATTGCATTATTGAAGAGTCTGTATCAGACCAGAACATCTCCCATACTCAGGAGCAAAAGGAGTTGCCTGATTACATCCAAGAAATGAAGCAAACTTTCATGGACAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTCCTTCTTTTCCATGTGAAGTAGTTATATCTGCTTACCATTCTCCACAAGTTGACAAGTCAACCGAGCCTTTCTCGTGGGGAAAGCCAGACCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAAGCAGATGAGTTGCTATTACCTGTTTTAAAGGAATATAACAAACATGAGACTCAACTGCGGTTGGAAGCATTTTACAGTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCAGTAAAAGGAATTACTGGTAAGCAGAATTCAGATTTAATAGATGATTCTGCAGAAAACTTGTCCAAGAGTAGGAAGAACAAGAGAGGAAGTTCTGTTGAACCTGGGGATAACAAATTGGAGACTTCAGAAGGAACAGAGGAAAGTCTAGCAGGTAGGAAGAAATCAAAAACGGAAGAGTCAACTAAAAGGAAGAATGATGGGGATACTGTAGCTAAGGTACAGTCAAAGAAAAAGAAAATCAATGATGATCCTTCTTCAGCACCTGGTACATCTGCGGTGGAGAATTTACAGCCATGCGTGCAAACCAAAGAAGAGCAATGTGATGGCAAGGCATTGGTTTGTAATAAAAGTGCCAGAGGCAGAGGCATAGGAGTAAAAAGAGGAAGGAAAAAGAAAATTCTCCGTTTTCAATCATGTGAAACTGAAACATCATCTAGTAGTACTGACATCAATGATCATGGGCCAAGAGTTCAAGTTGATATGTCAAAAGCTCCAGAAGTCGTGCGAAGGTCAATGCGATCTCGGAAACCTGTCAAATATTCTTTCCAGGACCTTGAAATTGAAGATGCTGTTGATTCATTTGATCAGAGCATTCAGACATGCTTGGGTGAAGATCCAATAGATGAAAAATTATCCCACATTTATGGTGTATGTGGAGATGGTGCAACTGATTTCAGCAGAGGGAAAGAAAGCAGTATACTAAATCCTCCTCTAAAAGAGAACTTGCCTAAAGATTATCTTGAGTCAGAAGGTCGGTTTTGCATTGATGGTGGTGAAACTAGTCATCCAGGGACGGGCAATCGTGATAATTCTTTTGATTCTGACCCTTCTAATGTCTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATAGTGAGATAAGTAACGACCATAATGCAAGTGATGATATGAACACTGCTACAATGGATTATACTGCAGATATACCACAGAATTCTGATTTTTTGGATGAAACTGACTGTGCTAAAAACAGCTCAGATTTATTGTTTTCTAGTGTCGAAAAAGCTGGAAATGAGATACAAGATGGAGGGGCGTCTCCTAAAATCAATAAAGAGGCGAATGACAACCTTCCAAATGCTAGTAGTTATGATCATTCTGACATAGGGGTCTTGATACCAGAGAATGCTCGTCATGATAGTGGGACCTCCACCTCCACCTCCACGGGGGCTTTTAGTGCTATGCCTTTTTTGAGGAAAAGAAGGAAGAACTGA 4080 0.398 MHGEFDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDEVQKTAVGGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRLEKNKEDKNQKSQGTHSSQNFTNSIAAGSDSNNSGGLISSEPGEPVDESIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMREIEQERTFVNKAAIIETLLNAENNGTSECSGNQHIGKSQEVNVDLVGENVQNEQSKLDGDTSIEVSFEYDCKNKLVSGEDDIFASLVGGNPVTLFYADDTAAKVQPSGSDSDCDWEEGPVQGRNTIFPGHNNMELKSSVADENINNINNESEIEWEEGDCDGAKSPLVCPAESRKLASRGHLEEESDLQEAIRRSLENTGDQKLKCMSTLDEHSNSYENKLDSELEHGDNLYCSGPMDLNDNSMGGSTLPRKGGTEQNELHEIVDGDKIHDYVTKNNPQTFHLRGSQSKSPVTFNSNKTEILIDRPYRLDICTCSEDSMSDANVTTKDEVPMVAKQSLSKVDPLGVTEEEKNYINDSELLSNSTDNTKPSILLMESSLKGSTEGLDIEPKFPSVDNDGNLSEERDSNLAKDAVNTPGDFPAQLAEIRLEDEMEILDREYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGMTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTILGRLDAKNRSNTRKKGSKVKEKINTSNCIIEESVSDQNISHTQEQKELPDYIQEMKQTFMDKHRNVSKNWHIPPSFPCEVVISAYHSPQVDKSTEPFSWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQNSDLIDDSAENLSKSRKNKRGSSVEPGDNKLETSEGTEESLAGRKKSKTEESTKRKNDGDTVAKVQSKKKKINDDPSSAPGTSAVENLQPCVQTKEEQCDGKALVCNKSARGRGIGVKRGRKKKILRFQSCETETSSSSTDINDHGPRVQVDMSKAPEVVRRSMRSRKPVKYSFQDLEIEDAVDSFDQSIQTCLGEDPIDEKLSHIYGVCGDGATDFSRGKESSILNPPLKENLPKDYLESEGRFCIDGGETSHPGTGNRDNSFDSDPSNVYLKMGGGFCLDDSEISNDHNASDDMNTATMDYTADIPQNSDFLDETDCAKNSSDLLFSSVEKAGNEIQDGGASPKINKEANDNLPNASSYDHSDIGVLIPENARHDSGTSTSTSTGAFSAMPFLRKRRKN. 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04377 1359 MobiDBLite consensus disorder prediction 967 1033 - -
Seca1g04377 1359 Coils Coil 619 653 - -
Seca1g04377 1359 SMART xpgineu 663 732 IPR006086 GO:0004518
Seca1g04377 1359 ProSitePatterns XPG protein signature 2. 666 680 IPR019974 GO:0016788
Seca1g04377 1359 MobiDBLite consensus disorder prediction 106 122 - -
Seca1g04377 1359 MobiDBLite consensus disorder prediction 1333 1348 - -
Seca1g04377 1359 SMART HhH_4 734 767 IPR008918 GO:0003677|GO:0003824
Seca1g04377 1359 MobiDBLite consensus disorder prediction 105 155 - -
Seca1g04377 1359 Pfam XPG I-region 666 747 IPR006086 GO:0004518
Seca1g04377 1359 SUPERFAMILY PIN domain-like 635 747 IPR029060 -
Seca1g04377 1359 FunFam DNA repair protein UVH3 732 789 - -
Seca1g04377 1359 CDD PIN_XPG_RAD2 649 730 - -
Seca1g04377 1359 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 1168 - -
Seca1g04377 1359 Gene3D - 732 787 - -
Seca1g04377 1359 MobiDBLite consensus disorder prediction 577 598 - -
Seca1g04377 1359 CDD H3TH_XPG 735 879 - -
Seca1g04377 1359 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 662 679 IPR006084 -
Seca1g04377 1359 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 683 703 IPR006084 -
Seca1g04377 1359 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 737 752 IPR006084 -
Seca1g04377 1359 FunFam DNA repair protein UVH3 612 731 - -
Seca1g04377 1359 MobiDBLite consensus disorder prediction 1295 1359 - -
Seca1g04377 1359 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 732 941 IPR036279 -
Seca1g04377 1359 Gene3D - 600 731 - -
Seca1g04377 1359 MobiDBLite consensus disorder prediction 123 149 - -
Seca1g04377 1359 MobiDBLite consensus disorder prediction 950 1047 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04377 Seca-Chr1 137936499 137948472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04377 657 764 Core DNA Replication Machinery Family AT5G26680 36.036 8.84e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04377 K10846 - gmx:100820295 1854.72