Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04375 ATGGAAAGAATTTCTTTCTGGGTAGTCTTCACTGCATCCCTTTTCCTCCTAAACATGACTAATTGTGTGGAGGATGAGGTCAAGAGAACACTGATACAGTTCCTGGAACAACTCTCTGGTAATAATAATGGCCAACAGAATTCCTTTTTGGATTGGAAACCAGACTCTGATCCCTGCACAGACCACTGGCAAGGTGTATACTGTGATGCTCAAAATATGTCTATAAAGAGGTTGAATCTTGACAGGTTCAATTTTTCTGGAACTCTTGATGTTGCTATGCTTTGTAACCTGCAGCCCCTAGCTGCATCTCTCACCTTTCTCAGTCTTGATGGAAACAACATTAGTCGAGGGATAACAGCTGAGATTGGAAACTGCAAACAACTCACTCGCCTGCATGTAAGTGGAAACCAACTTGTTGGAAACCTTCCTAGTTCACTCACCATGTTAAATAATTTGAAAATGCTAGACATTTCCAACAATAAGTTTTCAGGACCCTTGCCAGACTTGTCCAGAGTCTCAGGGCTGAATATGTTCCTTGCACAAAACAATAACCTCAGTGGAGATATACCCCCATTTCATTTCTCCAATTTTGACAAATTCAATGTCTCCTTCAACAATTTCAGTGGCCTCATTCCAGATGTGTATGGCTATTTCTTTGAAGACAGCTTCCTTGGTAATCCTGAACTCTGTGGAGATCCACTACCAAGAAATTGTTCTGGTCTTCCTCTGTCTGTTAGTGACACATCAGAAGGATCAAAGGGTCCTTCTAAAGAGCAGATTCTTATGTATTCAGGCTATGCTGCATTAGGTGTTGTCCTTATCCTGTTTGTTGTCTTAAGGCTGTGTAGAAGAAAGAAGAAGGGAAAGAAAATAGAAGCATTGAATGGGGTAGTGGCAACTGATGGTGGGATTGAAAAGCTCAGCAATGTTTCCAGTGAATACAAGGCTGAGGTAAGTAGGTCTGAGTTTTCATTCAACTCTGAAAGTGGGATGGTTTCACAATCACTTATAGTTCTTTCAAGGCCAGTGGTCGGTGAATTGAAATTGGAGGACTTGCTGAGGGCCCCTGCTGAATTGATTGGCAGAGGAAAGAATGGAAGTCTTTATAAGGTGATGCTTGCCAATGGGGTAATGGTGGTTGTGAAAAGGATCAAGGATTGGACAATTTCCAGCCATGACTTCAAGCATAGAATGCAGATGCTGAGTCAAGCAAAGCACCCTCATGTACTGTCACCTCTTGCTTTCTATTGTTCCAAACAAGAGAAGCTTTTGGTCTATGAATATCAGCAGAATGGAAGTTTATTCAAGCTTCTACATGGTGAACTTCAAAATCCTTTGACTGGACCAGCAGACTTCGATATGCAGCTATGA 1371 0.4172 MERISFWVVFTASLFLLNMTNCVEDEVKRTLIQFLEQLSGNNNGQQNSFLDWKPDSDPCTDHWQGVYCDAQNMSIKRLNLDRFNFSGTLDVAMLCNLQPLAASLTFLSLDGNNISRGITAEIGNCKQLTRLHVSGNQLVGNLPSSLTMLNNLKMLDISNNKFSGPLPDLSRVSGLNMFLAQNNNLSGDIPPFHFSNFDKFNVSFNNFSGLIPDVYGYFFEDSFLGNPELCGDPLPRNCSGLPLSVSDTSEGSKGPSKEQILMYSGYAALGVVLILFVVLRLCRRKKKGKKIEALNGVVATDGGIEKLSNVSSEYKAEVSRSEFSFNSESGMVSQSLIVLSRPVVGELKLEDLLRAPAELIGRGKNGSLYKVMLANGVMVVVKRIKDWTISSHDFKHRMQMLSQAKHPHVLSPLAFYCSKQEKLLVYEYQQNGSLFKLLHGELQNPLTGPADFDMQL. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04375 456 ProSiteProfiles Protein kinase domain profile. 354 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04375 456 Gene3D Ribonuclease Inhibitor 173 240 IPR032675 -
Seca1g04375 456 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Seca1g04375 456 Gene3D Phosphorylase Kinase; domain 1 325 428 - -
Seca1g04375 456 PANTHER OS05G0588300 PROTEIN 10 447 - -
Seca1g04375 456 SUPERFAMILY L domain-like 55 216 - -
Seca1g04375 456 Gene3D Ribonuclease Inhibitor 20 98 IPR032675 -
Seca1g04375 456 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Seca1g04375 456 SUPERFAMILY Protein kinase-like (PK-like) 358 446 IPR011009 -
Seca1g04375 456 Gene3D Ribonuclease Inhibitor 99 172 IPR032675 -
Seca1g04375 456 Pfam Protein tyrosine and serine/threonine kinase 358 447 IPR001245 GO:0004672|GO:0006468
Seca1g04375 456 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 94 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04375 Seca-Chr1 137879941 137881927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04375 50 440 Receptor kinase-like Gene Family AT1G60630 32.933 1.39e-48 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca1g04375 PK_Tyr_Ser-Thr 6.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04375 - - gmx:100813796 647.506