Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04372 ATGTATCGCCAGTGGTCTTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCAAAAAGATGGTTACATGAGCTACCCACCAGTTTTGCCTTCACCTTCATCCCCATATTCCCACAAAGAATCAATGTCTACATCATCACCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTTATCATAGTGATTCTGGCTGTTCTATTTTTCATTTCGGGTCTGCTCCACTTGCTTGTTAGATTTCTCATAAAGAACCCATCTTCCTCCTCAGCATCTGCTCAATCTAATAATAGACACCAGGAAATGTCTACCTCTGATGCTCTTCAGAGACAGCTGCAACAACTTTTCCATCTTCATGACTCTGGTCTTGACCAGGCTTTTATTGATGCACTTCCTGTTTTCCAGTATAAAGAGATTAAGGGACTGAAGGAGCCATTTGACTGTGCTGTTTGTCTCTGTGAATTTTCTGAAAAGGATAAGCTCAGGTTGCTCCCTATGTGTAGCCATGCCTTTCATATAAATTGTATAGACACCTGGCTTCTATCAAACTCCACATGCCCACTTTGTAGGGGAACCCTCCTTACTTCCATTGAAAATCCAATATATGATTTTGATGATTTGAGGGATGATGAGGGCTGCCCTTGTAATGGAGAAAATGAATTTGTGGCTAGACAAAAAACAGTTGAAATTCAAGAAACTGTAGAGAAAGGGGTTTTACCTGTAAGACTTGGTAAATTCAGAAGGTTGGATGTGGAGGCAGTGGAGAATGGAGAAGGAGGAGAGACTAGTAGCAGTAATTTGGATGCAAGAAGATGTTACTCCATGGGATCTTACCAATATGTTCTTGGCAACTCTGACCTCCAGATAGCCTTGAACCATGACCTGCAAATTCGTGATGCAAAGCTCATGGAAGGAAATGAAAACTTGGAGAAGCTTTCAGTTGAGGGGGATATTGAAGCAAAGAAGATTAGAAGTGTTAGTAAAGGTGAGAGCTATTCTGTTTCCAAAATCTGGCAGTGGTCAAATAAGGGCAAATTTTCAGTTTCTTCGGATGCCCAGATGGGTATGCCATCTTCCCTTAGAACAGACTTGCCTTGGATGAGGGAAACAGCAGGGACATGA 1116 0.4185 MYRQWSFDHTHLKMAWIQQKDGYMSYPPVLPSPSSPYSHKESMSTSSPGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSSASAQSNNRHQEMSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLTSIENPIYDFDDLRDDEGCPCNGENEFVARQKTVEIQETVEKGVLPVRLGKFRRLDVEAVENGEGGETSSSNLDARRCYSMGSYQYVLGNSDLQIALNHDLQIRDAKLMEGNENLEKLSVEGDIEAKKIRSVSKGESYSVSKIWQWSNKGKFSVSSDAQMGMPSSLRTDLPWMRETAGT. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04372 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 194 IPR013083 -
Seca1g04372 371 Pfam Ring finger domain 145 188 IPR001841 -
Seca1g04372 371 CDD RING-H2_EL5-like 145 188 - -
Seca1g04372 371 SMART ring_2 146 187 IPR001841 -
Seca1g04372 371 SUPERFAMILY RING/U-box 125 194 - -
Seca1g04372 371 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Seca1g04372 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 48 336 - -
Seca1g04372 371 FunFam RING-H2 finger protein ATL46 108 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04372 Seca-Chr1 137856192 137857307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04372 40 343 C3H Transcription Factor Family AT2G18650 41.570 1.50e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04372 - - cave:132183306 502.671