Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04369 ATGTATAGAATACTATCGACGCCGGCGTCAAAGTTCCGCCAATTCCGGCGACTCCGCTCGAGACCTCCGACGACCGATGCGACCGACGAGGAACAGGCCAACCACATCCTATGGCGGTACCAGATCCTGGACCCAGACAGCGAGATTGTGGCGTATTGGAACAAAGTGTTCCTTGTGACCAGCCTCCTCGCCCTCTTCGTCGACCCTCTTTACTTCTTCATCCCAACCGTTGGTGGCCCTGCTTGCGTACAGGGAGACCCCAATCTCGGCATCTTGGTTACCATTCTCCGCTCCTTCGCCGATCTCTTCTATCTCCTCCACATGATCATGAAGTTCCGCACTGCCTATGTAGCCCCCAATTCTAGAATCTTCGGTCGTGGTGACCTCGTTATGGATGCACGCAAAATCGCCCTCCGTTACTTGAAGTCTGATTTTGTTATCGACCTTGCTGCCACCATCCCTCTCCCACAGATTGTGATTTGGTTAGTCATTCCAGCGAGTAGAGATGCAAGAAGTGATCATACCAACAACACTCTTGCACTTTATGTTCTTATTCAGTATGTTCCTAGACTGTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGTGTTATCGCCAAGACTCCCTGGATTGGTGCCGCCTATAATCTTGTTCTCTACATGCTAGCTAGTCATGTTACAGGAGCAACTTGGTATCTATCATCAATAGGGAGACAATTTAACTGCTGGAAAGCACAGTGCGAACTGGAAAATAAATCACATACCCTCTCTTGCTTGCCTAGTTATCTTGATTGTAACAGTTTGAATCTCCCTGAAAGGCAATACTGGCTTAATATCACTCGTGTTGTTAGCAAATGCGATGCAAAGACCAAGATCAACATTAAATACAAGTTTGGGATGTTCGCAGATGCATTCTTGAATGATGTTGTTACTTCCAGTTTTAAGGAAAGATACTTTTATTGTCTTTGGTGGGGTCTAAGAAATTTAAGCTCCTATGGACAGAATTTGGACACCACCACATACCTTCCCGAGATAGTTTTTTGCATCGTCTTATGCATTGCTGGATTAGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACATACTTGCAATCCATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGACACTGAGGAGTGGATGAGGCATCGCCAGTTACCTCCAAATTTGCAGGAACGTGTCCGTCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTAAATGAAGAGGCCATACTGCTTTCATTACCTTTGGATCTTCGTCGTGAAATTCAACATCATTTGTGTCTTTCTCTTGTGCGGCGTGTCCCTTTCTTCTCACAAATGGATGATCAGCTACTTGATGCCATTTGTGAACGCCTTGTGTCATCATTGAGCACTCAAGGCACCTACATATTTAGAGAGGGTGATCCAGTAGATGAAATGTTGTTTATCATTAGAGGGCAATTGGAGAGCTCTACAACCAATGGAGGAAGGTTTGGATTCTTCAATTCCATTACACTCAGGCCTGGTGACTTTTGTGGAGAAGAATTGTTGACATGGGCCTTATTGCCAAACTCAACCCTCAACCTACCTTCCTCTACTCGTACTGTCAGAGCTCTTACTGAAGTTGAAGCTTTTGCGCTAGAGGCAGAGGATTTGAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCATTTAGGTATTATTCCCATCAATGGAGGACATGGGGTTCTTGCTTCATACAAGCTGCCTGGAGAAGGTATCAGAAAAGGAAGGCAACAAGGGAGTTATCCCTGAAAGAGAGACTCTACGACATGGAAGAGCCTGAGAGGGAGGATAGTTATTACATCGTGAGGGATGAAAGTGGAAATTATGAGGATGAGATTGAAGGATCACCAGGGAATGTGAAAAATGTTAAAAATCTTGGTGCAACTGTTTTAGCCTCAAAGTTTGCTGTCAATACAAAGAAAGGGAACAAGCTTCAAGGCAGTGATCCTGTGCCGCAATTGTTCAAGCCAGTTGAACCTGATTTCTCTATAGACCATGAAGAAGTTTAG 2100 0.4452 MYRILSTPASKFRQFRRLRSRPPTTDATDEEQANHILWRYQILDPDSEIVAYWNKVFLVTSLLALFVDPLYFFIPTVGGPACVQGDPNLGILVTILRSFADLFYLLHMIMKFRTAYVAPNSRIFGRGDLVMDARKIALRYLKSDFVIDLAATIPLPQIVIWLVIPASRDARSDHTNNTLALYVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFNCWKAQCELENKSHTLSCLPSYLDCNSLNLPERQYWLNITRVVSKCDAKTKINIKYKFGMFADAFLNDVVTSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPEIVFCIVLCIAGLVLFSLLIGNMQTYLQSMSVRLEEWRIRKRDTEEWMRHRQLPPNLQERVRRFVQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFREGDPVDEMLFIIRGQLESSTTNGGRFGFFNSITLRPGDFCGEELLTWALLPNSTLNLPSSTRTVRALTEVEAFALEAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYQKRKATRELSLKERLYDMEEPEREDSYYIVRDESGNYEDEIEGSPGNVKNVKNLGATVLASKFAVNTKKGNKLQGSDPVPQLFKPVEPDFSIDHEEV. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04369 699 CDD CAP_ED 452 583 IPR000595 -
Seca1g04369 699 Gene3D Jelly Rolls 450 570 IPR014710 -
Seca1g04369 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 692 - -
Seca1g04369 699 Gene3D - 59 375 - -
Seca1g04369 699 Gene3D Helix hairpin bin 376 443 - -
Seca1g04369 699 ProSiteProfiles cAMP/cGMP binding motif profile. 452 582 IPR000595 -
Seca1g04369 699 FunFam Cyclic nucleotide-gated ion channel 1 450 568 - -
Seca1g04369 699 SUPERFAMILY cAMP-binding domain-like 382 577 IPR018490 -
Seca1g04369 699 FunFam Cyclic nucleotide-gated ion channel 1 379 443 - -
Seca1g04369 699 Pfam Cyclic nucleotide-binding domain 475 563 IPR000595 -
Seca1g04369 699 Pfam Ion transport protein 52 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca1g04369 699 MobiDBLite consensus disorder prediction 677 699 - -
Seca1g04369 699 SUPERFAMILY Voltage-gated potassium channels 44 374 - -
Seca1g04369 699 SMART cnmp_10 452 583 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04369 Seca-Chr1 137694748 137699602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04369 14 699 Ion Channels AT5G14870 65.830 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04369 K05391 - gmx:100802812 1238.02