Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04347 ATGGCCGCAATACCTACTCATGTGAAAGCTTGGACCTACTCCGAATACGGCAAAACCGTTAATGTTCTCAAGTTTGCTCAAAGTGTGCCTTTACCCTCTCTCAAAGAGGATCAGGTTCTCATCAAGGTCGCTGCTGCATCCCTTAACCCCATTGATTATAAGAGAGCGGAGGGCATGTTCAAGGACACTGACTCCCCTTTACCCACTGTTCCGGGGTATGATGTTGCTGGAGTGGTGGTTAAGGTGGGAAGTGAAGTGAAGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGAGAACGCTGTGGTACATCCAAAGGTGATTGGTTCTTTATCAGAGTATACTGCTGCAGAAGAGAAACTATTGGCTCACAAGCCACAGAATCTGACCTTTGCTGAGGCTGCTAGCCTTCCTTTAACTATTGAGACTGCTTATGAAGGTCTTCAACAAGCTGGCTTTTCTGCTGGCAAATCAATTCTTGTGCTGGGAGGTGCCGGTGGAGTTGGAACCCATATTATTCAGCTTGCCAAGCATGTTTTTGGCGCATCCAAGGTAGCAGCTACATCTAGCACTGGGAAACTGGAATTGTTGAGGAACTTGGGAGCTGACTTACCTATTGATTATACAAAGGAGAATTTTGAGGACTTGCCTGAAAAGTTTGATGTGGTGTATGATGCAGTAGGGCAGACAGACAGGGCATTCAAGGCTTTGAAAGAAGGAGGCAAAGTTGTGACAATAGTACCACCAGGATTTCCACCAGCAATCTTTTTCATGCTCACTTCTAATGGGGCTATCTTAGAAAAACTAAAACCATACTTGGAGAGTGGCAAGGTGAAGCCAATACTTGACCCTGAGAGCCCATTTCCATTTTCTCAGACTGTTGAAGCATTTTCCTATCTGGAAACAGGCAGAGCTACTGGAAAAGTAGTCGTCCATCCCATACCATGA 954 0.4507 MAAIPTHVKAWTYSEYGKTVNVLKFAQSVPLPSLKEDQVLIKVAAASLNPIDYKRAEGMFKDTDSPLPTVPGYDVAGVVVKVGSEVKKFKVGDEVYGDINENAVVHPKVIGSLSEYTAAEEKLLAHKPQNLTFAEAASLPLTIETAYEGLQQAGFSAGKSILVLGGAGGVGTHIIQLAKHVFGASKVAATSSTGKLELLRNLGADLPIDYTKENFEDLPEKFDVVYDAVGQTDRAFKALKEGGKVVTIVPPGFPPAIFFMLTSNGAILEKLKPYLESGKVKPILDPESPFPFSQTVEAFSYLETGRATGKVVVHPIP. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04347 317 Gene3D - 150 264 - -
Seca1g04347 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 131 283 IPR036291 -
Seca1g04347 317 CDD MDR_like_2 9 313 - -
Seca1g04347 317 SUPERFAMILY GroES-like 5 165 IPR011032 -
Seca1g04347 317 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 317 IPR044626 GO:0016628
Seca1g04347 317 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 158 179 IPR002364 GO:0008270|GO:0016491
Seca1g04347 317 Pfam Zinc-binding dehydrogenase 202 313 - -
Seca1g04347 317 SMART PKS_ER_names_mod 18 313 IPR020843 GO:0016491
Seca1g04347 317 Pfam Alcohol dehydrogenase GroES-like domain 37 99 IPR013154 -
Seca1g04347 317 Gene3D - 15 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04347 Seca-Chr1 136735995 136738080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04347 36 260 Monolignol Biosynthesis Gene Families AT4G37980 26.515 3.80e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04347 K18980 - gmx:100817947 500.745