Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04340 ATGGATTGCAGATTTGAGAGCGCAGAAAGTCGCAGGAATAAGTGTGCAGCATGCTTCAGGCAGTTCAATAAGCTGGAACACCTTGTGGAGCACATGAGAATCTCATATCATTCAGTCCATGAACCAACCTGTGCCATTTGCAGGAAACACTGCAGGTCATTTGAATCTCTAAGGGAACACCTTATAGGTCCATTGCCAAAACAGGAATGCAGAGATATTTTTGCCAACAGAGGGTGCAAGTTTTGCTTGAAAGTCTTTGATAGCCCTACCTCTCGCAGGATCCACCAAGATAAATGCCAACTCTCTGGAATAAATGGAATAATTGGTCGCTTTTCAAACATGGGTATTCGTGATAATTTGACTAGTATTGGTGTGGGAGGAAAAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTCTGTGCAAGAGTCTGTTTAATTGATGAGCATGAGAACATCATCTTCCATTCTTACGTGAAGCCACCAATTCCTGTCACAAACTATAGGTATGAGACAACAGGCATTAGACAAGAACACTTGAGGGATGCAATGCCAATGAGACTAGTTCAGAGGAGGATTCAAGACTTCCTTTGCAATGGAGAACCAATGTGGACTATTCGACCAAGAGGTGGAAAAGCCAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCATGTTTGCAAATAGAATATCGAGCTGAAAAAATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACAAGCAAGCTGAGCAACTCACTCAAGTACTTAACACAAGCATATCTTGGGCAAGTATCTCTTACAATGTATGACATTCAAACCGGGATACAGGATCCTTATGATGATTGTGTTGCAACAATGAGGCTCTACATGAGAATGAGATCACAAGTACACAAAATAGAGGATTACCCTTTGGCATCAGACCCTCAGAACAGGAATAATTTTGCTTCGTGGAGGCAAAGTGAACTTGAAAGAATGACTCCTGAACAAATGCTAGAAATCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCCTTTTATAGTCCCTGA 1089 0.4242 MDCRFESAESRRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCAICRKHCRSFESLREHLIGPLPKQECRDIFANRGCKFCLKVFDSPTSRRIHQDKCQLSGINGIIGRFSNMGIRDNLTSIGVGGKGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVKPPIPVTNYRYETTGIRQEHLRDAMPMRLVQRRIQDFLCNGEPMWTIRPRGGKARILVGHGLDHDLACLQIEYRAEKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGQVSLTMYDIQTGIQDPYDDCVATMRLYMRMRSQVHKIEDYPLASDPQNRNNFASWRQSELERMTPEQMLEISRSDYYCWCLDSFYSP. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04340 362 SUPERFAMILY Ribonuclease H-like 145 307 IPR012337 -
Seca1g04340 362 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 357 IPR047021 GO:0004527
Seca1g04340 362 CDD REX4_like 133 302 IPR037431 GO:0006364|GO:0008408
Seca1g04340 362 Gene3D - 129 318 IPR036397 GO:0003676
Seca1g04340 362 FunFam RNA exonuclease 4 128 321 - -
Seca1g04340 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Seca1g04340 362 Pfam Exonuclease 151 278 IPR013520 -
Seca1g04340 362 SMART exoiiiendus 131 311 IPR013520 -
Seca1g04340 362 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04340 Seca-Chr1 136643910 136646035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04340 1 359 C2H2 Transcription Factor Family AT3G27970 71.823 0.0 557