Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04320 ATGGACAAGAAAATATGCAACTCGTCTCAAGATCCCGAAGTGAGAAAGGGACCTTGGACAATGGAAGAAGACTTGATCTTGATCAACTATATAGCCAATCATGGAGAAGGTGTCTGGAATTCCTTGGCGAAAGCTGCTGGTCTTAAACGTACGGGAAAGAGTTGTAGGCTTCGGTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGA 273 0.4432 MDKKICNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04320 90 FunFam Myb transcription factor 16 68 - -
Seca1g04320 90 SMART sant 15 65 IPR001005 -
Seca1g04320 90 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Seca1g04320 90 CDD SANT 18 63 IPR001005 -
Seca1g04320 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Seca1g04320 90 Gene3D - 16 68 - -
Seca1g04320 90 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 90 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca1g04320 90 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Seca1g04320 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 90 IPR017930 -
Seca1g04320 90 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04320 Seca-Chr1 135740646 135741164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04320 10 90 MYB Transcription Factor Family AT3G01530 82.716 4.59e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g04320 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04320 K09422 - zju:107415291 187.578