Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04303 ATGCTTCCACTGCAATTCAGCATCCACCCTCATCCTCAATTTCCATTGCTGAGCAGCATCAACACTTGTTCCTTCTGTCCCACGCCTCGCTCCCTCTTCAACCCCGACAACAACAACAACAGGCACTGTTTTCTTCGCTCCAATGTCGGAAGCCTCAACCTTAGGGTTTTTGCAATGTCTGATAACTCCGCCTTCAAAATGAACCTTAATGAGTACCTCGTCACTCTTGAGAAGCCCCTTGGCATCCGTTTCGCTCTCACCGCCGACGGAAAAATCATCGTCCACTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCCCGGATAATTATGGTGGGTGACACTTTGAAGAAAGCTGGCGATTCCTCTCAGAATAGTCTCGTCGAGATTAAAGACGTTGGAGATACACAGAAGGTGCTCAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCCATACAACTACTGCATAAGATGAATGATCTAGAAATAGTGTTTAATAGAGGTCGAGTTCCTATTGCCACGTGGAACAAGACTCTATTGGCATCAAATTTACAACCTTCTAGTGAGAGCTGTGGGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTTAAATCAAATGGAAGCGAGTTATTTGTCAATCAAAATCAACATGCCATCACCCATGGTGAGAGACATTTCTTAACTGAACACACAACACAACTTGCTTGTATTTTTACTGAAGAAGAGTGTGGAGATGGAGACTGGGGTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCTCTGGATCGTTCCAAGGATGAGATGTACTATAATCACTCACTTGGTATGCGTTATAGTAAGATTACAGAGCAAATATATGTGGGATCTTGTATACAAACGGAAGATGATGTGGAAACCTTGTCAAAAGTTGAGGGAGTTACTGCTGTGCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGTAAAATCAATCAATGACTCTTGTCAAAGGAATAATATTCTCATGATAAACTATCCTATACGGGAGGGAGATTCTTATGATATGAGAAAAAAACTTCCATTTTGCGTGGGGCTTCTATTACGGTTGCTAAGAAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTAATTGCATACCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGCAGGCCTGACAGGCCAGCAATTGCTTGGGCAACATGGGATCTTATAGCTATGGTTGAAAGGGGCAAACATGATGGACCTCCCACACATGCCGTCACATTTGTGTGGAATGGTCATGAGGTAACAAACCAGTCATCCATAACTCCACTGCAGTTTGTAGCTAATTTATCATTTGATTCTTAA 1446 0.4288 MLPLQFSIHPHPQFPLLSSINTCSFCPTPRSLFNPDNNNNRHCFLRSNVGSLNLRVFAMSDNSAFKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNSLVEIKDVGDTQKVLKEQTSSFSLVLERPTSPFPIQLLHKMNDLEIVFNRGRVPIATWNKTLLASNLQPSSESCGNSGFLMFNSKFLKSNGSELFVNQNQHAITHGERHFLTEHTTQLACIFTEEECGDGDWGHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGVTAVLNFQSGTEAENWGINVKSINDSCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEVTNQSSITPLQFVANLSFDS. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04303 481 ProSiteProfiles PDZ domain profile. 73 154 IPR001478 GO:0005515
Seca1g04303 481 ProSiteProfiles Dual specificity protein phosphatase domain profile. 286 448 IPR020422 GO:0006470|GO:0008138
Seca1g04303 481 Pfam Dual specificity phosphatase, catalytic domain 296 416 IPR000340 GO:0008138|GO:0016311
Seca1g04303 481 SUPERFAMILY PDZ domain-like 75 169 IPR036034 GO:0005515
Seca1g04303 481 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 276 419 IPR029021 -
Seca1g04303 481 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 279 446 - -
Seca1g04303 481 CDD DSP_laforin-like 285 431 IPR045204 GO:0019203
Seca1g04303 481 Gene3D Protein tyrosine phosphatase superfamily 276 451 IPR029021 -
Seca1g04303 481 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 58 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04303 Seca-Chr1 135105923 135118257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04303 138 461 Protein tyrosine phosphatase (PTP) family AT3G01510 66.975 4.47e-157 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04303 - - gmx:100814503 832.787