Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04302 ATGTTTCAGGGAGAGGATGTAACTTTAGTGGGAGACTTTACTGGAAATTGGAAAGAACCACTCAGGGCAAACCATCAGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCCACCGCATCACCGGCAGAAAGGGATGAAAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTCCGGCCTTCTGTTCAGCACCAGCAAAAAGATGCCAACGTTGTCAAGGTGATTGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGTTGGCAAAAGCAGCTCGTTGTATTGCGTTCTCTATCTGCCCCATCAGATTAGCTCCCAAATAG 387 0.4315 MFQGEDVTLVGDFTGNWKEPLRANHQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDERGNVNNIIVIGETASVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSICPIRLAPK. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04302 128 Pfam Glycogen recognition site of AMP-activated protein kinase 3 77 IPR032640 -
Seca1g04302 128 CDD E_set_AMPKbeta_like_N 4 74 - -
Seca1g04302 128 Gene3D Protein tyrosine phosphatase superfamily 79 89 IPR029021 -
Seca1g04302 128 Gene3D Immunoglobulins 6 78 IPR013783 -
Seca1g04302 128 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 3 126 - -
Seca1g04302 128 SUPERFAMILY E set domains 4 75 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04302 Seca-Chr1 135093434 135094427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04302 3 128 Protein tyrosine phosphatase (PTP) family AT3G01510 69.841 2.36e-65 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04302 - - gmx:100814503 254.988