Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04298 ATGGCGGAACGTGTTGTTGGACAAGGCTCATTCAGTATTGTGTTTCAGGCCAAGTGTCTTGAAACTGGAGAAACTGTGGTAATCAAGAAAGTTTTGCAGGATAAAAGATATAAGAACCGGGAATTGCAAACAATGCGCCTTCTTGATCATCCCAATGTTGTATCACTCAAACATTGTTTCTTTTCTACCACAGACAAAGATGACCTCTATCTCAATTTGGTACTTGAGTATGTACCTGAGACAGTATATCGTGTGGTGAAACACTATAGCAAGGCAAACCAACGGATGCCCCTGATATATGTTAAACTTTACACATATCAGGTTGTTTACATGTTATTTTTGTGA 345 0.3884 MAERVVGQGSFSIVFQAKCLETGETVVIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDDLYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQVVYMLFL. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04298 114 SUPERFAMILY Protein kinase-like (PK-like) 3 110 IPR011009 -
Seca1g04298 114 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04298 114 ProSitePatterns Protein kinases ATP-binding region signature. 6 30 IPR017441 GO:0005524
Seca1g04298 114 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 110 - -
Seca1g04298 114 Pfam Protein kinase domain 3 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04298 114 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca1g04298 114 FunFam Glycogen synthase kinase-3 beta 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04298 Seca-Chr1 135012085 135012516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04298 3 109 MAP Kinase Gene Family AT5G19010 29.204 4.88e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca1g04298 Pkinase 9.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04298 K00924 - cave:132180804 211.846