Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04297 ATGTGGTCTGTGGGTTGTGTGCTTTCTGAGCTGCTCCTGGGACAGCCTCTGTTGCCTGGAGAAAGTGGAGTTGATCAACTTGTTGAAATTATCAAGGTACTTGGGACACGAACTCGTGAGGAAATAAAATGCATGAATCCAAATTACACAGAGTTTAAGTTCCCTCAAATCAAGGCTCACCCCTGGCATAAGATATTCCATAAGCGAATGCCCCCAGAAGCAGGAGATCTTGTTTCAAGACTTCTTCAATATTCTCCAAATTTACGATGCACTGCTTTGGAAGCATGTGTCCACCCATTTTTTGATGAACTCCGTGATCCAAACACCCGTCTCCCTAACGGCCGCCCTATGCCGCCCCTCTTTAATTTCAAACCTCAAGAGCTGAAGGGAGTAACTTTGGAGCTGCTATGCAAACTTGTTCCAGAACATGCCCGGAAGCAGTGTCCATCCCTTAATTTCTAG 462 0.4589 MWSVGCVLSELLLGQPLLPGESGVDQLVEIIKVLGTRTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAGDLVSRLLQYSPNLRCTALEACVHPFFDELRDPNTRLPNGRPMPPLFNFKPQELKGVTLELLCKLVPEHARKQCPSLNF. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04297 153 Pfam Protein kinase domain 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04297 153 Gene3D Transferase(Phosphotransferase) domain 1 1 145 - -
Seca1g04297 153 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04297 153 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 147 - -
Seca1g04297 153 SUPERFAMILY Protein kinase-like (PK-like) 1 126 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04297 Seca-Chr1 134992298 135001870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04297 1 109 Core Cell Cycle Gene Families AT1G20930 35.398 5.93e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca1g04297 Pkinase 1.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04297 K00924 - mnt:21403420 293.123