Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04294 ATGCCATTTGCACCAAGCAAAATTGAAATGGAAGCAATGCATGGCTACCTAAACAAAGGCAAGGGAATATGGGACTTTTCCCAGAAAATCCCTCTTCAGGATGGTGCAACTTCACAACCTTATATGAGTCCTTCTCATTCATATGCACCAGTGTTACTGCCAATGAAGCCTAGGTTTCAAGACCACCTTTCACCCATGGTTGCAACAGGAAATGGTAACTGGGACATTGACCAGAATAGTGACAAGTTGCAACAAAAGAGGGTGCAGAGTGAAAATCAGCAAAAAGATACTAACACAGTCAAAGGCCAATGGACTAAAGAAGAGGATAGGGTACTTGTGCAATTGGTGAAACGCTTTGGGCTAAAAAAATGGTCGCAAATAGCGAAACTATTGAATGGCAGGATTGGGAAACAATGCAGAGAGAGATGGCATAACCATCTCCGACCAAACATTAGGAAGGAAGCATGGAATGAAGATGAGGACAAAATACTCATTGAAGCTCATAAGGAAGTTGGGAACAAGTGGGCAGAAATTGCAAGGAGATTGCCTGGCCGCACTGAGAATACCATCAAGAACCATTGGAATGCCACAAAGAGGCGCATGAACACCAAGAAGAAGAACAAGCGCACTTGTGGTTCTAAAGGAAAACTGCTTCAAAACTACATGAGAGAAGTCATTGTAGCTGAGAAGGCTGGAAAGGAATTGAAGAAATCCATGAAAAAGATGAACATAAGTGAGGATCACAACAATGACCTAAGTATCCTTTGTGTTCAGTATGAAAGCTCTGAGGGTGACTTAAGCTCTGAGGATTGGACTGCTCAGGATGAAGTTGGTTGGAGCATATTGCAACAACTTGTGCCAATGATGCATATTGGAGATGAAATTGCAAGTGAGTCTATTGTGGAAGATGGAACAGAGGATTATGTGGCTGCAATGGAGATTGAGCCAGAGGTTCCCATGAAGAAGGAAATGGATCTCATGGAGATGATCTATAAAAACCATTAA 1005 0.4229 MPFAPSKIEMEAMHGYLNKGKGIWDFSQKIPLQDGATSQPYMSPSHSYAPVLLPMKPRFQDHLSPMVATGNGNWDIDQNSDKLQQKRVQSENQQKDTNTVKGQWTKEEDRVLVQLVKRFGLKKWSQIAKLLNGRIGKQCRERWHNHLRPNIRKEAWNEDEDKILIEAHKEVGNKWAEIARRLPGRTENTIKNHWNATKRRMNTKKKNKRTCGSKGKLLQNYMREVIVAEKAGKELKKSMKKMNISEDHNNDLSILCVQYESSEGDLSSEDWTAQDEVGWSILQQLVPMMHIGDEIASESIVEDGTEDYVAAMEIEPEVPMKKEMDLMEMIYKNH. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04294 334 Gene3D - 154 220 - -
Seca1g04294 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 202 IPR017930 -
Seca1g04294 334 MobiDBLite consensus disorder prediction 71 100 - -
Seca1g04294 334 Gene3D - 100 152 - -
Seca1g04294 334 MobiDBLite consensus disorder prediction 70 101 - -
Seca1g04294 334 FunFam Transcriptional activator Myb isoform A 100 153 - -
Seca1g04294 334 CDD SANT 155 198 IPR001005 -
Seca1g04294 334 SUPERFAMILY Homeodomain-like 99 194 IPR009057 -
Seca1g04294 334 ProSiteProfiles Myb-like domain profile. 148 198 IPR001005 -
Seca1g04294 334 SMART sant 100 149 IPR001005 -
Seca1g04294 334 SMART sant 152 200 IPR001005 -
Seca1g04294 334 CDD SANT 104 147 IPR001005 -
Seca1g04294 334 ProSiteProfiles Myb-like domain profile. 96 147 IPR001005 -
Seca1g04294 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 151 IPR017930 -
Seca1g04294 334 Pfam Myb-like DNA-binding domain 104 162 - -
Seca1g04294 334 PANTHER MYB PROTEIN-RELATED 94 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04294 Seca-Chr1 134603843 134606487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04294 93 225 MYB Transcription Factor Family AT4G18770 66.165 8.39e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g04294 Myb_DNA-bind_6 2.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04294 K09422 - gmx:100793032 303.908