Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04283 ATGCAACAAGAACAACCTCACCTTTACGTCTATACCAAACCATCTTTCCCCCTCCCTCTCAACGACGATGACCACAAAGCCACCGAGTTCCGGCCATTCTCTGCTGCTTCATCACCCCCAATGCGCACCTTCCACCTTTCATGGCTCAACCTCTTCTCTTGCTTCTTCTCCACCTTCTCCATCCCTCCTCTCCTCCCCATCATCCGCGACGACCTCAACCTCACCCCCGCCGACATCGGCGCCGCCGGCACCGCCTCCTTCGCCGGCTCCATCCTCTCCCGCCTATTAATGGGCCCAGCCTGCCACCTCCTAGGCCCACGCATAGCCTCTGGCACACTCTCCCTCCTAACCGCACCAATCATCCTCGCCACATCATTAGCCTCCTCGGCCCAAGCCTTCATCATCATTCGCTTCCTCGTGGGCTTCTCCCTCGCAACCTTCGTCTCCAACCAGTACTGGATGAGTTCCATGTTCTCAACCAAAGTCGTCGGCGCCGCCAACGCCGTTGCCGCCGGTTGGGCCAACATGGGCGCCGGCGTGACACAGCTCCTAATGCCTCTCGTCTACTCACTCATCACGTGCCTCGTCCACGTATCATCCTCAACCGCTTGGAGGTTAGCGTTCATCGTTCCCGCGGTTTTTCAAGCCGTTACGGGTATCCTCGTTTTGGCATTCGGACATGACCCCGTGCCTTCTGGGACTGTGGGCCCGGGCCCGGGCCCTAAAGAGAACGTGTTCAGGGTTGTGCTTCACGGTTTGGGGGATTACAGAGGGTGGATCCTGGGCTTGCTTTATGGGTTCTCGTTTGGGGTGGAACTAACCACCGATAACATCATAGCGCAATATTTTTATGACAGGTTTGAGGTGAATCTGCAAACAGCGGGGACTATTGCGGCGTGTTTTGGGATGGCGAATTTTTTTTCGAGGCCAATGGGAGGGATGGTTTCGGATCGAATGGGGAAGAGGTTTGGGGTTAGGGGAAGGTTGTGGGCTTTGTGGATGGTTCAAACGGTTGCGGGTTTGCTGTGTGTGTTGCTGGGCCGAGTTAACTCGCTGTGGAGCTCGGTTGTTGTCATGTGCTGTTTCTCTGTGTTTGTTCAAGCTGCTTCTGGCCTCACGTTTGGCGTGGTCCCTTTCGTTTCCAAAAGATCACTAGGGGTAATATCAGGAATGACAGGAAGCGGTGGAACAATGGGGGCTGTTGTCACTCAGTTGCTGTTGTTCTCAGGGGACAACTTTACCAAGCAAACAAGCATTTCCCTGATGGGTCTAATGATAATATTCTGTACTCTTCCCGTAACCTTGATCTACCTCCCTCAATGGGGAGGAATTTTTTGTGGTCCTTCCTCAGATCATGATTCCCTCCAAGAAAGTTACAGCTTGCTAGAATAG 1392 0.5402 MQQEQPHLYVYTKPSFPLPLNDDDHKATEFRPFSAASSPPMRTFHLSWLNLFSCFFSTFSIPPLLPIIRDDLNLTPADIGAAGTASFAGSILSRLLMGPACHLLGPRIASGTLSLLTAPIILATSLASSAQAFIIIRFLVGFSLATFVSNQYWMSSMFSTKVVGAANAVAAGWANMGAGVTQLLMPLVYSLITCLVHVSSSTAWRLAFIVPAVFQAVTGILVLAFGHDPVPSGTVGPGPGPKENVFRVVLHGLGDYRGWILGLLYGFSFGVELTTDNIIAQYFYDRFEVNLQTAGTIAACFGMANFFSRPMGGMVSDRMGKRFGVRGRLWALWMVQTVAGLLCVLLGRVNSLWSSVVVMCCFSVFVQAASGLTFGVVPFVSKRSLGVISGMTGSGGTMGAVVTQLLLFSGDNFTKQTSISLMGLMIIFCTLPVTLIYLPQWGGIFCGPSSDHDSLQESYSLLE. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04283 463 Pfam Major Facilitator Superfamily 48 401 IPR011701 GO:0022857|GO:0055085
Seca1g04283 463 SUPERFAMILY MFS general substrate transporter 24 436 IPR036259 -
Seca1g04283 463 FunFam Nitrate transporter 2.1 242 443 - -
Seca1g04283 463 Gene3D MFS general substrate transporter like domains 40 232 IPR036259 -
Seca1g04283 463 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 14 458 IPR044772 GO:0015112
Seca1g04283 463 FunFam Probable high-affinity nitrate transporter 2.4 36 234 - -
Seca1g04283 463 ProSiteProfiles Major facilitator superfamily (MFS) profile. 43 435 IPR020846 GO:0022857
Seca1g04283 463 Gene3D MFS general substrate transporter like domains 244 441 IPR036259 -
Seca1g04283 463 CDD MFS_NRT2_like 44 435 IPR044772 GO:0015112
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04283 Seca-Chr1 134058641 134064534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04283 5 462 Inorganic Solute Cotransporters AT5G14570 60.669 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04283 K02575 - cave:132180989 624.78