Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g04279 | ATGGCCTCATCTAGCTACTCTAATTCTCCCTGTGCTGCCTGCAAGTTTCTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCCCCATATTTTCCACCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCTAGCAATGTGAGCAAGCTTCTCAATGAAGTCCAACCCCATCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAGGCAAGAATAAAAGATCCAGTTTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTAGATGCTACAAATGCAGATTTGATTCGCTATACTTGCAGTGAAATGCCAACTCAAGATGCTAGAAGGATGGGTGAAGGTGGAGGTTCATCTCTTGCTGCTCAATCATCTCCTGGTTACTATTATCCTTCTCCTTGGAACAATGATCCACTTGGGGATAGTTATCACAGAGGAGGTGATAATAATATGTGA | 498 | 0.4337 | MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCSEMPTQDARRMGEGGGSSLAAQSSPGYYYPSPWNNDPLGDSYHRGGDNNM. | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g04279 | 165 | Coils | Coil | 89 | 109 | - | - | |
Seca1g04279 | 165 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Seca1g04279 | 165 | MobiDBLite | consensus disorder prediction | 146 | 165 | - | - | |
Seca1g04279 | 165 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - | |
Seca1g04279 | 165 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 122 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g04279 | Seca-Chr1 | 133752894 | 133754996 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g04279 | 4 | 113 | AS2 family | AT3G27650 | 85.455 | 6.28e-70 | 207 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LOB | Seca1g04279 | LOB | 9e-43 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g04279 | - | - | gmx:100306630 | 303.523 |