Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04279 ATGGCCTCATCTAGCTACTCTAATTCTCCCTGTGCTGCCTGCAAGTTTCTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCCCCATATTTTCCACCAGAAGAGCCTCAAAAGTTTGCAAATGTTCACAAGATATTTGGTGCTAGCAATGTGAGCAAGCTTCTCAATGAAGTCCAACCCCATCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAGGCAAGAATAAAAGATCCAGTTTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTAGATGCTACAAATGCAGATTTGATTCGCTATACTTGCAGTGAAATGCCAACTCAAGATGCTAGAAGGATGGGTGAAGGTGGAGGTTCATCTCTTGCTGCTCAATCATCTCCTGGTTACTATTATCCTTCTCCTTGGAACAATGATCCACTTGGGGATAGTTATCACAGAGGAGGTGATAATAATATGTGA 498 0.4337 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCSEMPTQDARRMGEGGGSSLAAQSSPGYYYPSPWNNDPLGDSYHRGGDNNM. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04279 165 Coils Coil 89 109 - -
Seca1g04279 165 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Seca1g04279 165 MobiDBLite consensus disorder prediction 146 165 - -
Seca1g04279 165 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Seca1g04279 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04279 Seca-Chr1 133752894 133754996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04279 4 113 AS2 family AT3G27650 85.455 6.28e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca1g04279 LOB 9e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04279 - - gmx:100306630 303.523