Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04270 ATGCCACACTCCAACCTTGGCATTTCCCACATTCCCAAATGGCACACCTTCATCTGCAACTACAACAAGCCCCAAACCCGCTTTCTCCTCTGCTTAACCGAATCGGGGCTCTCCAAAAACTTTCGGGTCAGGAGACCACAAACCTGTTGCCGACTCGCGGCGTCAGAGAGCAAGGACGACGATGGTTCTGGGTTCCAGAATGTACCCGGAAAACGGGCCGGGTTCGTGGCGTCCATTTTACCCGGAGGCAGATGGTGGACCTTGCCGGAGCACCCGGAAGACAACGATGCGGAGGCGACGGCGGCCATGCTCGCTTTGCGGCGAATGTGGGAGTTGGTTGCCGATGAGCGATGGGTTACGTTTGTGGCGTTTGGGTCCCTTCTTGTCGCTGCGCTTTCAGAAATCACCATCCCAAGTATATTGGCAGCGTCAATATTTTCAGCACAGAGTGGTGAGACCATGGCATTCTCTAGGAAGGCTCTATTTCTGGCTGTTCTTTGTTTGACTTCAGGGATTTTCAGTGGTCTACGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCGTCTACGAGAAAATTTGTATATAGCCATTCTTTTTCAGGACATATCCTACTTTGATAAAGAAAAAGTCGGTGCCTTAACAAGCAGGCTTGCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGACCTTCAGTTGATATTACGCAACACTTTGCAGGGAGCAGGAGCAATGATTAATTTGCTGGCTTTATCTTGGCCTCTGGCATTATCTGCATTAGTGATTTGTTCTATGTTATCTGCAATCTTCCTGGTTTATGGCTGGTATCAAAGAAAAGCAACAAAGTTAACCCAAGATTTCACAGCCTGTGCCAATGACGTAGCTCAGGAAACACTTTCTTTGATAAAAACTGTCCAGAGTGTATGGAACCGGAGAAAAAGAATTTGGAAGGTACAAGAAATGGCTACAGAAATTAGCATTTATAAACAGTCGAGAGAGTGTGGCTTATGGACTCTGGAACCTGAGCTTTAA 1044 0.4693 MPHSNLGISHIPKWHTFICNYNKPQTRFLLCLTESGLSKNFRVRRPQTCCRLAASESKDDDGSGFQNVPGKRAGFVASILPGGRWWTLPEHPEDNDAEATAAMLALRRMWELVADERWVTFVAFGSLLVAALSEITIPSILAASIFSAQSGETMAFSRKALFLAVLCLTSGIFSGLRSGCFGILNVTLVKRLRENLYIAILFQDISYFDKEKVGALTSRLAADCQRLSHVIGNDLQLILRNTLQGAGAMINLLALSWPLALSALVICSMLSAIFLVYGWYQRKATKLTQDFTACANDVAQETLSLIKTVQSVWNRRKRIWKVQEMATEISIYKQSRECGLWTLEPEL. 348
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04270 347 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 121 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04270 347 Gene3D ABC transporter type 1, transmembrane domain 101 325 IPR036640 GO:0005524|GO:0016020
Seca1g04270 347 Pfam ABC transporter transmembrane region 123 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04270 347 PANTHER ABC TRANSPORTER B FAMILY 100 328 IPR039421 -
Seca1g04270 347 SUPERFAMILY ABC transporter transmembrane region 107 325 IPR036640 GO:0005524|GO:0016020
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca1g04270 Seca-Chr1 132618091 132632889 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04270 172 261 Calmodulin-binding Proteins AT2G36910 30.435 8.13e-06 45.8