Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04268 ATGTCTGTTCTGAATTGTTGTGTAACTGTTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTACTTGGAGGGTGAAAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCATCTGAAAAAATTTTCCAAGTGATGAATCTTCTGCCCAGTGACCAATTCTTAGCCAAAGGAGTTAAGTTGCCGAGGTTAATGGGGCACATTCAGTTTGTAAATGTATCATTTCATTATCCTTCAAGGATTATGATGCCCGTTCTAGAACACTTGAACTTCTCTGTAGAAGAAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGCAGTGGAAAGAGCACATTGCTCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATACATTGATGGATTCCCTCTTAAAGAGTTGGATATCAGGTGGCTGAGGCAGAAAATCGGTTATGTTCCACAGGAATCCCATCTCTTTCACATGGACATTAGGTCAAACATAAAATATGGTTGCCCTAGGAACATAGAACAAGAAGATATTGAGCGGGCAGCAAAACAGGCCTATGCCCATGACTTTATTTCTTCACTTCCTAATGGCTATGAAACCCTTGTTGATGACAATGTACTTAGTGGGGGACAAAAGCAGCGAATTGCCATAGCCAGGGCCATTCTTAGGGACCCAGTTATTATGATACTTGATGAAGCTACCAGTGCCCTAGATTTTGAGAGTGAGCATTATATCAAGGAGGTGTTGTATGCGTTGAAAGATGAATCTAAACCACGAACCATCATTATTATAGCACATAGGCTTTCTACTATTAAAGCTTCTGACAGGATCTTTGTTATGGATGATGGTCGCATGATTGAGATGGGAAACCATGAAGAGCTTCTGCTCAAGGATGGGCTCTATGCAAAGTTACATAATATTCAAGAAGATATTTTGACTTGA 954 0.4004 MSVLNCCVTVEQLTKYVLYCEWLIYATWRVKNSLSSLLQSIGASEKIFQVMNLLPSDQFLAKGVKLPRLMGHIQFVNVSFHYPSRIMMPVLEHLNFSVEENQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQKIGYVPQESHLFHMDIRSNIKYGCPRNIEQEDIERAAKQAYAHDFISSLPNGYETLVDDNVLSGGQKQRIAIARAILRDPVIMILDEATSALDFESEHYIKEVLYALKDESKPRTIIIIAHRLSTIKASDRIFVMDDGRMIEMGNHEELLLKDGLYAKLHNIQEDILT. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04268 317 Gene3D - 71 313 IPR027417 -
Seca1g04268 317 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 73 311 IPR003439 GO:0005524
Seca1g04268 317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 312 IPR027417 -
Seca1g04268 317 Gene3D ABC transporter type 1, transmembrane domain 10 70 IPR036640 GO:0005524|GO:0016020
Seca1g04268 317 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524|GO:0016887
Seca1g04268 317 Pfam ABC transporter 91 239 IPR003439 GO:0005524
Seca1g04268 317 SMART AAA_5 100 288 IPR003593 GO:0016887
Seca1g04268 317 PANTHER ABC TRANSPORTER B FAMILY 7 311 IPR039421 -
Seca1g04268 317 FunFam Multidrug ABC transporter ATP-binding protein 65 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04268 Seca-Chr1 132613320 132617328 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04268 47 313 Calmodulin-binding Proteins AT2G36910 48.162 2.50e-70 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04268 - - gmx:100797529 547.354