Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04259 ATGGTAAAGCGTCTACGAGAAAATTTGTATATAGCCATTCTTTTTCAGGACATATCCTACTTTGATAAAGAAAAAGTTGGTGCCTTAACAAGCAGGCTTGCAGCACATTGTCAACGACTATCCCATGTTATAGGAAATGACCTTCAATTGATATCATGCAACACTTTGCAGGGAGCAGGAGCAATGTTTAATTTGTTGGATTTATCTTGGCCTCTGGCATTATCTGCATTAGTGATTTGTTCTATGTTATCTGCAATCTTCCAAGTTTATGGTTGGTATCGAGGAAAAGCAGCAGAGTTAACCCAAGATTTCACAGCTTGTGCCAATGACGTAGCTCAGGAAATAATTTCTTTGATAAGAACTGTCCGAGTGTATGGAACAGGAGAAAAAGAATTTGGAAGGTACAAGAAATGGCTACAAAAATTAGCATTTATAAACAGTCGAGAGAGTGTGGCTTATGGGCTCTGGAACCTGAGCTTTAACACCCTTTACCGCTCAACTCAGATATTTGCAGTGCTATTAGGAGGAATGTCTATTCTGAATTGTTGTGAAACTGTTGAGAAACTTACTAACCAGAGGCAAGTAATTGTCAGAGCCCTTCCTCACCCTACTGCTGAGATGCTTGTTCTAGAACACTTAAACTTCTCTGTAGAAGAAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTGCTCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGGAATCCCATGTCTTTCACATGGACATTAGGTCAAACATAAAATATGGTTGCCCTAGGAATAGAGAACAAGAAGATATTGAACAGGCAGCAAAACAAGCCTATGCCCATGACTTTATTTCTTCACTTCCTAATGGCTATGAAACCCTTGTTGATGATAAAGTACTTAGTGGGGGACAAAAGCAGCGAATTGCCATAGCCAGGGCCATTCTTAGGGACCTAGTTATTATGATACTTGATGAAGCTACCAGTGCCCTAGATTCCGAGAGTGAGCATTATATCAAGGAGGTGTTGTATGCGTTGAAAGATGAATCTAAACCACAAACCATCATTATCATAGCACATAGGTTTTCTACTATTAAAGCTTCTGACAAGATCTTTGTTATGGATGATGGTCGCATGATTGAGATGGGAAACCAAGAGCTTCTGCTCAAGGATGGGCTCTATGCAAAGTTACATAATAATCAAGAAGATATTTTGACTTGA 1233 0.3966 MVKRLRENLYIAILFQDISYFDKEKVGALTSRLAAHCQRLSHVIGNDLQLISCNTLQGAGAMFNLLDLSWPLALSALVICSMLSAIFQVYGWYRGKAAELTQDFTACANDVAQEIISLIRTVRVYGTGEKEFGRYKKWLQKLAFINSRESVAYGLWNLSFNTLYRSTQIFAVLLGGMSILNCCETVEKLTNQRQVIVRALPHPTAEMLVLEHLNFSVEENQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQESHVFHMDIRSNIKYGCPRNREQEDIEQAAKQAYAHDFISSLPNGYETLVDDKVLSGGQKQRIAIARAILRDLVIMILDEATSALDSESEHYIKEVLYALKDESKPQTIIIIAHRFSTIKASDKIFVMDDGRMIEMGNQELLLKDGLYAKLHNNQEDILT. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04259 410 SUPERFAMILY ABC transporter transmembrane region 2 181 IPR036640 GO:0005524|GO:0016020
Seca1g04259 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 405 IPR027417 -
Seca1g04259 410 Gene3D - 206 249 IPR027417 -
Seca1g04259 410 Gene3D - 250 406 IPR027417 -
Seca1g04259 410 Pfam ABC transporter transmembrane region 1 179 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04259 410 Gene3D ABC transporter type 1, transmembrane domain 1 199 IPR036640 GO:0005524|GO:0016020
Seca1g04259 410 PANTHER ABC TRANSPORTER B FAMILY 205 250 IPR039421 -
Seca1g04259 410 Pfam ABC transporter 210 333 IPR003439 GO:0005524
Seca1g04259 410 ProSitePatterns ABC transporters family signature. 305 319 IPR017871 GO:0005524|GO:0016887
Seca1g04259 410 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 191 405 IPR003439 GO:0005524
Seca1g04259 410 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 181 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04259 410 SMART AAA_5 219 382 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04259 Seca-Chr1 132446550 132453340 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04259 4 406 Calmodulin-binding Proteins AT2G36910 29.032 1.74e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04259 - - pcin:129294067 543.502