Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04256 ATGCAGGAAAGAGAACAAGCACTGAGGTCGTTCAAGAGTGGAAACACACCAATTCTAGTGGCAACGAAAGTTGCAGCATGTGGTCTCGATATTCCAAGGGTAGCACATGTGGTAAATTTTGATCTCCCCAATGAAATTGATGATTATGTGCACAGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGAAACAGCCTTCTTCAATGACAGTAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGGAATTGGAGAAATAATTATTGGAGAAATAAGTACCCTAACTGAGGCAACATATCGTAGATGA 339 0.4159 MQEREQALRSFKSGNTPILVATKVAACGLDIPRVAHVVNFDLPNEIDDYVHRIGRTGRAGKMGLETAFFNDSNLSLAKPLADLMQEANQEVPGIGEIIIGEISTLTEATYRR. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04256 112 CDD SF2_C_DEAD 2 69 - -
Seca1g04256 112 Pfam Helicase conserved C-terminal domain 2 60 IPR001650 -
Seca1g04256 112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 92 IPR027417 -
Seca1g04256 112 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 99 IPR001650 -
Seca1g04256 112 Gene3D - 1 96 IPR027417 -
Seca1g04256 112 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 92 - -
Seca1g04256 112 SMART helicmild6 1 60 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04256 Seca-Chr1 132381732 132382070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04256 2 92 Eukaryotic Initiation Factors Gene Family AT3G19760 34.066 3.07e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04256 K11594 - csin:114306398 165.236