Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04252 ATGATTAATTTTCTGGCTTTATCTTGGCCTCTGGCATTATCTGCACTAGTGATTTGTTCTATGTTATCTGCAATCTTCCAGGTTTATGGCTGGTATCAAAGAAAAGCAGCAGAGTTAACCCAAGATTTCACAGCTGGTGCCAATGACGTAGCTCAGGAAACACTTTCTTTGGTAAGAACTGTCCGAGTGTATGGAACAAGAGAAAAAGAATTTGGAAGTCGAGAGAGTGTGGCTTATGGGCTCTGGAACCTGAGCTTTAACACCCTTTACCGCTCAACTCAGATGCTTGTTCTAGAACACTTAACCTTCTCTGTAGAAGAAAATCAAGTCATTGCCATTGAATCCCATCTCTTTCACATGGACATTAGGTCAAACATAAAATATGGTTGCCATAGGAACATAGAACAAGAAGTTATTGAACAAGCAACAAAACAGGCCTATGCCCATGACTTTATTTCTTCACTTCCCAATGGCTATGAAACCCTTGTTGACGATAATGTACTTAGTGGGGGACAAAAGCAGAGAATTGCCATAGCCAGGGCCATTCTTAGGAACCCAGTTATTATGATACTTAATGACGCTACCAGTGCCCTAGATTCTGAGAGTGAGCATTATATCAAGGTATATTTCTCAAATTCTAGCTTTTGA 648 0.4028 MINFLALSWPLALSALVICSMLSAIFQVYGWYQRKAAELTQDFTAGANDVAQETLSLVRTVRVYGTREKEFGSRESVAYGLWNLSFNTLYRSTQMLVLEHLTFSVEENQVIAIESHLFHMDIRSNIKYGCHRNIEQEVIEQATKQAYAHDFISSLPNGYETLVDDNVLSGGQKQRIAIARAILRNPVIMILNDATSALDSESEHYIKVYFSNSSF. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04252 215 Gene3D ABC transporter type 1, transmembrane domain 1 105 IPR036640 GO:0005524|GO:0016020
Seca1g04252 215 Gene3D - 112 207 IPR027417 -
Seca1g04252 215 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 71 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g04252 215 PANTHER ABC TRANSPORTER B FAMILY 4 88 IPR039421 -
Seca1g04252 215 Pfam ABC transporter 107 196 IPR003439 GO:0005524
Seca1g04252 215 SUPERFAMILY ABC transporter transmembrane region 4 96 IPR036640 GO:0005524|GO:0016020
Seca1g04252 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 209 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04252 Seca-Chr1 132336338 132340970 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04252 110 207 Calmodulin-binding Proteins AT2G36910 50.000 1.09e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04252 - - vum:124820309 168.703