Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04244 ATGGTTATTCCTGTGATATCCATAATACCTATACTATATCTAATCAGGTACAAGAAATGGCTACAAAAATTAGCATATATAAACAGCCGAGAGAGTGTGGCTTATGGGCTCTGGAACCTGAGCTTTAACACCCTTTACCGCTCAACTCAGATATTTGCAGTGCTGTTAGGAGGAATGTCTGTTATGAGTTGTTGTGTAACTGTTGAGCAACATACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCATCTGAAAATTTTTTCCAACTGATGAATCTTCTGCCCAGTGAACAATTCTTAGCCAAAGGCAATGGAAAGAGCACATTGCTCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATACATTGATGGATTCCCTCTTAAAGAGTTGGATATCAGGTGGCTGAGGCAGAAAATCGGTTATGTTCCACAGGAATCCCATCTCTTTCACATGGACATTAGGTCAAACATAAAATATGGTTTCCCTAGGAACATAGAACAAGAAGATATTGAACAGGAAGCAAAACAGGCCTATGCCCATGACTTTATTTCTTCACTTCCTAATGGCTATGAAACCATTGTTGATGACAATGTACTTAGTGGGGGACAAAAGCAGCGAATTGCCATAGCCAGGTCCATTCTTAGGGACCCAGTTATTATGATACTTGATGAAGCTACCAGTGCCCTAGATTCTGTGAGTGAGCATTATATCAAGGAGGTGTTGTATGCGTTGAAAGATGAATCTAGACCACGAACCATCATTATCATAGCACATAGGCTTTCTACTATTAAAGCTTCTGACAAGATCTTTGTTATGGATGATGGTCGCATGATTGAGATGGGAAACCAAGAGCTTCTACTCAAGGATGGGCTCTATGCAAAGTTACATAATATTCAAGAAGATATTTTGACTTGA 981 0.3955 MVIPVISIIPILYLIRYKKWLQKLAYINSRESVAYGLWNLSFNTLYRSTQIFAVLLGGMSVMSCCVTVEQHTKYVLYCEWLIYATWRVTNSLSSLLQSIGASENFFQLMNLLPSEQFLAKGNGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQKIGYVPQESHLFHMDIRSNIKYGFPRNIEQEDIEQEAKQAYAHDFISSLPNGYETIVDDNVLSGGQKQRIAIARSILRDPVIMILDEATSALDSVSEHYIKEVLYALKDESRPRTIIIIAHRLSTIKASDKIFVMDDGRMIEMGNQELLLKDGLYAKLHNIQEDILT. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04244 326 PANTHER ABC TRANSPORTER B FAMILY 16 115 IPR039421 -
Seca1g04244 326 Gene3D ABC transporter type 1, transmembrane domain 13 110 IPR036640 GO:0005524|GO:0016020
Seca1g04244 326 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 321 IPR003439 GO:0005524
Seca1g04244 326 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524|GO:0016887
Seca1g04244 326 SUPERFAMILY ABC transporter transmembrane region 16 115 IPR036640 GO:0005524|GO:0016020
Seca1g04244 326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 321 IPR027417 -
Seca1g04244 326 Pfam ABC transporter 121 249 IPR003439 GO:0005524
Seca1g04244 326 Gene3D - 121 322 IPR027417 -
Seca1g04244 326 SMART AAA_5 113 298 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04244 Seca-Chr1 132122511 132127396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04244 119 322 Calmodulin-binding Proteins AT2G36910 49.282 9.68e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04244 - - gmx:100797529 487.648