Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04213 ATGGAGTCAACTGTTGAAGGAGTTGAGTCTTTATCTGAGGTTCAGAACTCAGTTTCTGGGGTAGTTCATGATCCCCCTTCGACATCGGGGATTCCCCGGCCTTCCCAGCCTCCCTTGAGAGCATCAAGAAATCATGGGACCTCTTCCAATCACCATAATTCTGGAATGAAGACCAGTCAGCATCAAAATAGCTATGTAGTTAATCAAAAGCAACCCAATCAGGAGGCTAACAATGTGAAGCATGAAGGAGTGCCAAATATGGAGAAGCAGTATAATAGCCCTAATGGCAAATCTGACTATGTGAGCCTTAATAAAACTATTGAAAGTTGTTTGGGGAAGAATATCTCCAAAATGGAAACAAAATTGTGCATCGATGATTCCAAGAATTGTGAATCTAGTGGAATATTAGAATCTGAAAATTACATAGTAGGTTCATCAAAAGGTGTTGTTGATCAAGCAAATAGTAGATATTCTGCCACTGTCTATTCAGAAGCCAAAGAAAGTTTCACCAATACTGGAGTAAGTGAATGTGTCATTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAATGAGAGCAGGAAGACTAGCATCTATAGAGAGAGCACTGGAAGTGATGTTAGTGATGAGAGCAGCACCAGTACTTTTAGCAGTTCTTTGTATAAACCCCACAAGGCAAATGATGTAAGATGGGAAGCAATTCAAGCCATCCGAGCTCGTGATGGGGGATTGGAAATGAGACATTTTAGGTTGTTGAAGAAGTTGGGATGTGGCGACATAGGAAGTGTATATCTTGCAGAGTTAAGTGGCACAAGGACTTGTTTTGCCATGAAAGTAATGAACAAAACAGAGCTGGCAAGTCGCAAGAAGCTTCTGAGGGCTCAGACAGAGAGAGAGATATTGCAGTCTCTAGATCATCCATTTTTACCCACATTGTATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTGATGGAGTTTTGCCCTGGTGGGGACCTACATGCACTCAGACAAAGACAACCTGGGAAGTATTTTTCAGAGCATGCTGCCAGGTTTTACGTGGCAGAAGTTCTCCTTTCTTTGGAGTACTTGCACATGCTAGGGATCATCTACAGAGACCTTAAACCCGAAAATGTGTTAGTGAGAGAAGATGGTCACATTATGCTATCAGATTTTGATCTCTCTCTAAGGTGTGCTGTCAGTCCAACTCTGGTTAAGTCATCAAACACCAGCTTGGAGGCAAAAAGTTCAGGATACTGCATTCAACCTGCATGCATTGAGCCAACTTGTGTAATGCAACCAGACTGCATCCAACCTTCATGTTTTACACCGCGTTTCCTATCCAGCAAATCCAAGAAAGAAAAAAAGCTCAAACCAAAGAATGACATGCATAATCAGGTGACCCCTCTCCCTGAGCTTATTGCCGAGCCCACAAATGCTCGATCAATGTCTTTCGTGGGCACACACGAGTACTTGGCGCCTGAAATCATTAAAGGTGAAGGGCATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTATATGAGCTTTTGTTTGGTAGAACACCATTCAAAGGTTCAGCAAATCGCGCAACCCTATTCAATGTAGTTGGCCAGCCCTTAAGGTTTCCAGAATCACCTACTGTCAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAGCCTCAACATCGTCTTGCCTATAGACGCGGAGCAACAGAAATAAAACAACATCCATTCTTTCATAATGTTAACTGGGCACTGATTCGTTGTGCAAATCCTCCAGAGGTGCCAAGACAGGTTTTCAAAACACTCACAGCTGCTGAAAAGGTGCCTGGAGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA 1911 0.426 MESTVEGVESLSEVQNSVSGVVHDPPSTSGIPRPSQPPLRASRNHGTSSNHHNSGMKTSQHQNSYVVNQKQPNQEANNVKHEGVPNMEKQYNSPNGKSDYVSLNKTIESCLGKNISKMETKLCIDDSKNCESSGILESENYIVGSSKGVVDQANSRYSATVYSEAKESFTNTGVSECVIVDKSVESGEVTNSCEFNESRKTSIYRESTGSDVSDESSTSTFSSSLYKPHKANDVRWEAIQAIRARDGGLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLSLEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNTSLEAKSSGYCIQPACIEPTCVMQPDCIQPSCFTPRFLSSKSKKEKKLKPKNDMHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQVFKTLTAAEKVPGVKPSGNYLDIDFF. 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04213 636 Gene3D Transferase(Phosphotransferase) domain 1 338 405 - -
Seca1g04213 636 SUPERFAMILY Protein kinase-like (PK-like) 229 613 IPR011009 -
Seca1g04213 636 Gene3D Phosphorylase Kinase; domain 1 252 337 - -
Seca1g04213 636 PANTHER FLIPPASE KINASE 1-RELATED 61 613 - -
Seca1g04213 636 Gene3D Transferase(Phosphotransferase) domain 1 485 609 - -
Seca1g04213 636 FunFam serine/threonine-protein kinase D6PK-like 486 609 - -
Seca1g04213 636 MobiDBLite consensus disorder prediction 205 225 - -
Seca1g04213 636 ProSiteProfiles Protein kinase domain profile. 254 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04213 636 SMART serkin_6 254 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04213 636 FunFam serine/threonine-protein kinase D6PK-like 338 405 - -
Seca1g04213 636 MobiDBLite consensus disorder prediction 40 62 - -
Seca1g04213 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672|GO:0006468
Seca1g04213 636 FunFam Serine/threonine-protein kinase D6PK-like 252 337 - -
Seca1g04213 636 MobiDBLite consensus disorder prediction 1 24 - -
Seca1g04213 636 MobiDBLite consensus disorder prediction 75 98 - -
Seca1g04213 636 MobiDBLite consensus disorder prediction 1 62 - -
Seca1g04213 636 Pfam Protein kinase domain 255 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04213 636 Pfam Protein kinase domain 488 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04213 636 CDD STKc_phototropin_like 252 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04213 Seca-Chr1 131188147 131191236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04213 150 636 AGC Kinase Gene Family AT5G47750 69.583 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca1g04213 Pkinase 3.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04213 K08286 - gmx:100802402 1026.16