Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04206 ATGATTATAATGATATGGAATATGGTACCTGAGGTGTATAAGCCCAGAGTGGGTGAAGTACAACTCAGGGAGGTGAATGATGATTATGATGATACTGATGATTACGATGATTATGATGAAATTGATGAGTGTGATGATTATGGTGATATTGATGATTATGATGGTTATGGTGATATTGATGATGTTGTAGGTGGTGTCATAAGAGACACCATAACGTCTGCTTTCACATGGTTCTTCTGGCTTGTGACAACACACCCTTTAGAGAAATCCAAGATTCTTCAAGAAAACAAAGACAATTTTGCACCTGAAAAAGGGAACCAACTTATTCTTGGTGTGGAAGAGGTGAGAAAGCTGATTTATCTTCATACAGCTATATGTGAATCTTTGAGGCTTTTTCCTCCTATACCCTTTGAGAGAAAGCAAGCAATAACATCAGATGTTATTCCTAGTGGCCACAGTGTTAAGCCAAATACAATGATATTGTTCTCTTTGCATGCTATAGGGAGACTTGAAGAAATATGGGGAAGTGATTGCTTGGAGTACAAGTCAGAGAGATGGATTTCAGAGAGAGGAGGCATTGTTTATGTGCCATCTTACAAATATTTAAGCTTTAATGCAGGACCAAGGACATGTTTGGGAAAGGACATGAGCTTCATTCAATTGAAGATGGTGGCAGCTGCTATTTTGTGGAATTATCAAGTGCAAGTGGTTAAAGATCATCCTGTTTCCCCAAACCTTTCAATTGTTCTTTTAATGTAG 759 0.3794 MIIMIWNMVPEVYKPRVGEVQLREVNDDYDDTDDYDDYDEIDECDDYGDIDDYDGYGDIDDVVGGVIRDTITSAFTWFFWLVTTHPLEKSKILQENKDNFAPEKGNQLILGVEEVRKLIYLHTAICESLRLFPPIPFERKQAITSDVIPSGHSVKPNTMILFSLHAIGRLEEIWGSDCLEYKSERWISERGGIVYVPSYKYLSFNAGPRTCLGKDMSFIQLKMVAAAILWNYQVQVVKDHPVSPNLSIVLLM. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04206 252 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 204 213 IPR017972 GO:0005506|GO:0016705
Seca1g04206 252 SUPERFAMILY Cytochrome P450 68 250 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 PANTHER CYTOCHROME P450 68 241 - -
Seca1g04206 252 PRINTS P450 superfamily signature 66 83 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 PRINTS P450 superfamily signature 202 211 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 PRINTS P450 superfamily signature 123 134 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 PRINTS P450 superfamily signature 211 222 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 Gene3D Cytochrome P450 6 249 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 Pfam Cytochrome P450 69 245 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 PRINTS E-class P450 group I signature 75 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 PRINTS E-class P450 group I signature 122 140 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 PRINTS E-class P450 group I signature 201 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g04206 252 PRINTS E-class P450 group I signature 211 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04206 Seca-Chr1 130972317 130973766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04206 68 252 Cytochrome P450 AT2G23180 48.649 2.78e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04206 - - gmx:100781709 272.707