Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04197 ATGGAGGAGCCATGTGTTGCTGCGGATGGTTTCACTTATGAGTACAGAGCAATCAAGACATGGCTAAGCACACACAATGTGTCACCGGTGACAAAGCTTAAACTCCAAGATTCTGAGTTGACTTTTACGTTCTGCTATTCAAGAGTGGAAATCAGGAGTGACCTTTCTCATTAG 174 0.4368 MEEPCVAADGFTYEYRAIKTWLSTHNVSPVTKLKLQDSELTFTFCYSRVEIRSDLSH. 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04197 57 SMART Ubox_2 1 53 IPR003613 GO:0004842|GO:0016567
Seca1g04197 57 Pfam U-box domain 1 41 IPR003613 GO:0004842|GO:0016567
Seca1g04197 57 ProSiteProfiles U-box domain profile. 1 57 IPR003613 GO:0004842|GO:0016567
Seca1g04197 57 SUPERFAMILY RING/U-box 1 44 - -
Seca1g04197 57 CDD RING-Ubox_WDSUB1-like 1 41 - -
Seca1g04197 57 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 43 IPR013083 -
Seca1g04197 57 PANTHER WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04197 Seca-Chr1 130590952 130591125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04197 1 41 U-box Gene Family AT2G19410 63.415 1.25e-12 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04197 - - lja:Lj4g3v2172820.1 73.9442