Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04196 ATGGTTATAGCTATTTATGAAGACAACCCTTATAGTGGTGATTCTGGAATAGTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGTTAACTCCCAAATTGAGTACATATTAGTTCTTCCATCGTTCACTTCTTTATCTGATCCAAAAGGGGCTGTTCTTGATGAATTGCTGAAGTTGTTGCCACTTAAATCTCGTGTTTTTATTCTACTTCAAGCATCATTCCCTATAGTGACCCATTTGTTTAGAGAAGCTAAGAAAGTTGGATTCTTGGAGAAAGACTCAGCATGGATTATCAATGAGGGGCTTACAACGGATGCAGCTTTATATGGATTCGTTTTTCCATTGATGGAGTTGGTGGACGAAAAGAGCCAGCAACGTATCACTTACTCGTTGGTCTTGGAGATTCATGGCAGTGGCACTAGCAGCAGCAGTGTATTGGCTCATCTATGTTTTCTGTATTACAACTTAGAATATGCTTATGGTACATCTGTAAGGATAAATGGAATGTGA 507 0.3925 MVIAIYEDNPYSGDSGIVSLFSEALQKVNSQIEYILVLPSFTSLSDPKGAVLDELLKLLPLKSRVFILLQASFPIVTHLFREAKKVGFLEKDSAWIINEGLTTDAALYGFVFPLMELVDEKSQQRITYSLVLEIHGSGTSSSSVLAHLCFLYYNLEYAYGTSVRINGM. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04196 168 Pfam Receptor family ligand binding region 2 105 IPR001828 -
Seca1g04196 168 SUPERFAMILY Periplasmic binding protein-like I 2 135 IPR028082 -
Seca1g04196 168 PANTHER OS06G0188250 PROTEIN 2 103 - -
Seca1g04196 168 Gene3D - 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04196 Seca-Chr1 130589051 130590394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04196 2 135 Ion Channels AT4G35290 34.074 2.22e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04196 - - gmx:100818078 166.392